Publication Catalogue

Publications of the Department of Bacterial and Inflammatory Diseases 2006

A. Original articles and reviews

  1. Antila M, He Q, de Jong C, Aarts I, Verbakel H, Bruisten S, Keller S, Haanperä M, Mäkinen J, Eerola E, Viljanen MK, Mertsola J, van der Zee A: Bordetella holmesii DNA is not detected in nasopharyngeal swabs from Finnish and Dutch patients with suspected pertussis. J Med Microbiol 2006;55:1043-1051.
  2. Bergman M, Huikko S, Huovinen P, Paakkari P, Seppälä H, the Finnish Study Group for Antimicrobial Resistance (FiRe N: Macrolide and Azithromycin Use Are Linked to Increased Macrolide Resistance in Streptococcus pneumoniae. Antimicrob Agents Chemother 2006;50:3646-3650.
  3. Caro V, Elomaa A, Brun D, Mertsola J, He Q, Guiso N: Bordetella pertussis, Finland and France. Emerging Infectious Diseases 2006;12:987-989.
  4. Coenen S, Ferech M, Dvorakova K, Hendrickx E, Suetens C, Goossens H, on behalf of the ESAC Project Group: European Surveillance of Antimicrobial Consumption (ESAC): outpatient cephalosporin use in Europe. J Antimicrob Chemother 2006;58:413-417.
  5. Coenen S, Ferech M, Malhotra-Kumar S, Hendrickx E, Suetens C, Goossens H, on behalf of the ESAC Project Group: European Surveillance of Antimicrobial Consumption (ESAC): outpatient macrolide, lincosamide and streptogramin (MLS) use in Europe. J Antimicrob Chemother 2006;58:418-422.
  6. Duvall R, Eklund M, Tran T, Hitchins A: Improved DNA probe detection of Listeria monocytogenes in enrichment culture after physical-chemical fractionation. J AOAC INT 2006;89:172-179.
  7. Eklund M, Bielaszewska M, Nakari U, Karch H, Siitonen A: Molecular and phenotype profiling of sorbitol-fermenting Escherichia coli O157:H¯ isolates from Finland. Clinical microbiology and infection 2006;12:634-641.
  8. Ferech M, Coenen S, Dvorakova K, Hendrickx E, Suetens C, Goossens H, on behalf of the ESAC Project Group: European Surveillance of Antimicrobial Consumption (ESAC): outpatient penicillin use in Europe. J Antimicrob Chemother 2006;58:408-412.
  9. Ferech M, Coenen S, Malhotra-Kumar S, Dvorakova K, Hendrickx E, Suetens C, Goossens H, on behalf of the ESAC Project Group: European Surveillance of Antimicrobial Consumption (ESAC): outpatient antibiotic use in Europe. J Antimicrob Chemother 2006;58:401-407.
  10. Ferech M, Coenen S, Malhotra-Kumar S, Dvorakova K, Hendrickx E, Suetens C, Goossens H, on behalf of the ESAC Project Group: European Surveillance of Antimicrobial Consumption (ESAC): outpatient quinolone use in Europe. J Antimicrob Chemother 2006;58:423-427.
  11. Fredriksson-Ahomaa M, Stolle A, Siitonen A, Korkeala H: Sporadic human Yersinia enterocolitica infections caused by bioserotype 4/O:3 originate mainly from pigs. J Med Microbiol 2006;55:747-749.
  12. Gatto A, Peters T, Green J, Fisher I, Gill O, O’Brien S, Maguire C, Berghold C, Lederer I, Gerner-Smidt P, Torpdahl M, Siitonen A, Lukinmaa S, Tschäpe H, Prager R, Luzzi I, Dionisi M, Wannet W, Heck M, Coia J, Brown D, Usera M, Echeita A, Grimont P, Threlfall E: Distribution of molecular subtypes within Salmonella enterica serotype Enteritidis phage type 4 and S. Typhimurium definitive phage type 104 in nine European countries, 2002-2003: results of an international multi-centre stud. Epidemiol Infect 2006;134:729-736.
  13. Gerner-Smidt P, Scheutz F, on behalf of the study group participants, Eklund M, Siitonen A: Standardized pulsed-field gel electrophoresis of Shiga toxin-producing Escherichia coli: the PulseNet Europe Feasibility Study. Foodborne Pathogens and Disease 2006;3:74-80.
  14. Guerin P, Nygard K, Siitonen A, Vold L, Kuusi M, de Jong B, Rottingen J, Alvseike O, Olsson A, Lassen J, Andersson Y, Aavitsland P: Emerging Salmonella Enteritidis anaerogenic phage type 14b: Outbreak in Norwegian, Swedish and Finnish travellers returning from Greece. EuroSurveillance 2006;11:61-6.
  15. Gutacker MM, Mathema B, Soini H, Shashkina E, Kreiswirth BN, Graviss EA, Musser JM: Single-Nucleotide Polymorphism-Based Population Genetic Analysis of Mycobacterium tuberculosis Strains from 4 Geographic Sites. J Infect Dis 2006;193:121-128.
  16. Hakanen AJ, Kotilainen P, Pitkänen S, Huikko S, Siitonen A, Huovinen P: Reduction in fluoroguinolene susceptibility among non-typhoidal strains of Salmonella enterica isolated from Finnish patients. J Antimicrob Chemother 2006;57:569-572.
  17. Hallanvuo S, Peltola J, Heiskanen T, Siitonen A: Simplified phenotypic scheme evaluated by 16S rRNA sequencing for differentiation between Yersinia enterocolitica and Y. enterocolitica-like species. J Clin Microbiol 2006;44:1077-1080.
  18. Hannu T, Inman R, Granfors K, Leirisalo-Repo M: Reactive arthritis or post-infectious arthritis? Best Practice & Research. Clinical Rheumatology 2006;20:419-433.
  19. Harju TH, Leinonen M, Nokso-Koivisto J, Korhonen T, Räty R, He Q, Hovi T, Mertsola J, Bloigu A, Rytilä P, Saikku P: Pathogenic bacteria and viruses in induced sputum or pharyngeal secretions of adults with stable asthma. Thorax 2006;61:579-584.
  20. Haukka K, Kolmonen E, Hyder R, Hietala J, Vakkilainen K, Kairesalo T, Haario H, Sivonen K: Effect of nutrient loading on bacterioplankton community composition in lake mesocosms. Microbial ecology in health and disease 2006;51:137-146.
  21. Jalava K, Hakkinen M, Valkonen M, Nakari U, Palo T, Hallanvuo S, Ollgren J, Siitonen A, Nuorti P: An outbreak of gastrointestinal illness and erythema nodosum from grated carrots contaminated with Yersinia pseudotuberculosis. J Infect Dis 2006;194:1209-1216.
  22. Koort JK, Suokas E, Veiranto M, Mäkinen TJ, Jalava J, Törmälä P, Aro HT: In vitro and in vivo testing of bioabsorbable antibiotic containing bone filler for osteomyelitis treatment. J BIOMED MATER RES 2006;78:532-540.
  23. Koskinen H, Rautakorpi UM, Sintonen H, Honkanen P, Huikko S, Huovinen P, Klaukka T, Palva E, Roine RP, Sarkkinen H, Varonen H, Mäkelä M, for the MIKSTRA Collaborative Study Group: Cost-effectiveness of implementing national guidelines in the treatment of acute otitis media in children. INT J TECHNOL ASSESS HEALTH CARE 2006;22:454-459.
  24. Kotilainen P, Heiro M, Jalava J, Rantakokko V, Nikoskelainen J, NIkkari S, Rantakokko-Jalava K: Aetiological diagnosis of infective endocarditis by direct amplification of rRNA genes from surgically removed valve tissue. An 11-year experience in a Finnish teaching hospital. Ann Med 2006;38:263-273.
  25. Kotilainen P, Lehtopolku M, Hakanen AJ: Myopericarditis in a patient with Campylobacter enteritidis: A case report and literature review. Scand J Infect Dis 2006;38:549-552.
  26. Kuusi M, Lahti E, Virolainen A, Hatakka M, Vuento R, Rantala L, Vuopio-Varkila J, Seuna E, Karppelin M, Häkkinen M, Takkinen J, Gindonis V, Siponen K, Huotari K: An outbreak of Streptococcus equi subspecies zooepidemicus associated with consumption of fresh goat cheese. BMC Infectious Diseases 2006;6:36.
  27. Lahti E, Mertsola J, Kontiokari T, Eerola E, Ruuskanen O, Jalava J: Pneumolysin polymerase chain reaction for diagnosis of pneumococcal pneumonia and empyema in children. Eur J Clin Microbiol Infect Dis 2006;25:783-789.
  28. Lautamäki R, Borra R, Iozzo P, Komu M, Lehtimäki T, Salmi M, Jalkanen S, Airaksinen KEJ, Knuuti J, Parkkola R, Nuutila P: Liver steatosis coexists with myocardial insulin resistance and coronary dysfunction in patients with type 2 diabetes. American journal of physiology. Endocrinology and metabolism 2006;291:E282-E290.
  29. Lukinmaa S, Mattila K, Lehtinen V, Hakkinen M, Koskela M, Siitonen A: Territorial waters of the Baltic Sea as a source of infections caused by Vibro cholerae non-O1, non-O-139: report of 3 hospitalized cases . DIAGN MICROBIOL INFECT DIS 2006;54:1-6.
  30. Lukinmaa S, Nakari U, Liimatainen A, Siitonen A: Genomic diversity within phage types of Salmonella enterica ssp. enterica serotypes Enteritidis and Typhimurium. Foodborne Pathogens and Disease 2006;3:97-105.
  31. Lyytikäinen O, Nakari UM, Lukinmaa S, Tran MNN, Siitonen A: Surveillance of listeriosis in Finland during 1995-2004. EuroSurveillance 2006;6:82-5.
  32. Maksimow M, Miiluniemi M, Marttila-Ichihara F, Jalkanen S, Hänninen A: Antigen targeting to endosomal pathway in dendritic cell vaccination activates regulatory T cells and attenuates tumor immunity. Blood 2006;108:1298-1305.
  33. Maksimow M, Söderström TS, Jalkanen S, Eriksson JE, Hänninen A: Fas costimulation of naïve CD4 T cells is controlled by NF-kappaB signaling and caspase activity. J LEUKOC BIOL 2006;79:369-377.
  34. Marttila-Ichihara F, Smith DJ, Stolen C, Yegutkin GG, Elima K, Mercier N, Kiviranta R, Pihlavisto M, Alaranta S, Pentikäinen U, Pentikäinen O, Fülöp F, Jalkanen S, Salmi M: Vascular Amine Oxidases Are Needed for Leukocyte Extravasation Into Inflamed Joints In Vivo. Arthritis Rheum 2006;54:2852-2862.
  35. Mentula S, Virtanen T, Kanervo-Nordström A, Harmoinen J, Westermarck E, Rauto M, Huovinen P, Könönen E: Relatedness of Escherichia coli strains with different susceptibility patterns isolated from beagle dogs during ampicillin treatment. International Journal of Antimicrobial Agents 2006;27:46-50.
  36. Mercier N, Osborne-Pellegrin M, El HK, Kakou A, Labat C, Loufrani L, Henrion D, Challande P, Jalkanen S, Fève B, Lacolley P: Carotid arterial stiffness, elastic fibre network and vasoreactivity in semicarbazide-sensitive amine-oxidase null mouse. CARDIOVASC RES 2006;72:349-357.
  37. Müller HP, Barrieshi-Nusair KM, Könönen E, Yang M: Effect of triclosan/copolymer-containing toothpaste on the association between plaque and gingival bleeding: a randomized controlled clinical trial. J Clin Periodontol 2006;33:811-818.
  38. Mäkinen J, Marjamäki M, Marttila H, Soini H: Evaluation of a novel strip test, GenoType Mycobacterium CM/AS, for species identification of mycobacterial cultures. Clinical microbiology and infection 2006;12:481-483.
  39. Mäkinen J, Marttila HJ, Marjamäki M, Viljanen MK, Soini H: Comparison of Two Commercially Available DNA Line Probe Assays for Detection of Multidrug-Resistant Mycobacterium tuberculosis. J Clin Microbiol 2006;44:350-352.
  40. Nieminen M, Henttinen T, Merinen M, Marttila-Ichihara F, Eriksson JE, Jalkanen S: Vimentin function in lymphocyte adhesion and transcellular migration. Nature Cell Biology 2006;8:156-162.
  41. Niva M, Hernesmaa A, Haahtela K, Salkinoja-Salonen M, Sivonen K, Haukka K: Actinobacterial communities of boreal forest soil and lake water are rich in mycobacteria. Boreal Environment Research 2006;11:45-53.
  42. Pirilä L, Söderström K, Hietarinta M, Jalava J, Kytö V, Toivanen A: Fatal Myocardial Necrosis Caused by Staphylococcus lugdunensis and Cytomegalovirus in a Patient with Scleroderma. J Clin Microbiol 2006;44:2295-2297.
  43. Pulkki J, Huikko S, Rautakorpi U, Honkanen P, Klaukka T, Mäkelä M, Palva E, Roine R, Sarkkinen H, Varonen H, Huovinen P, for the MIKSTRA Collaborative Study Group: Management of pain in acute otitis media in Finnish primary care. Scand J Infect Dis 2006;38:265-267.
  44. Rantala M, Haanperä-Heikkinen M, Lindgren M, Seppälä H, Huovinen P, Jalava J, the Finnish Study Group for Antimicrobial Resistance: Streptococcus pneumoniae Isolates Resistant to Telithromycin. Antimicrob Agents Chemother 2006;50:1855-1858.
  45. Rautakorpi U, Huikko S, Honkanen P, Klaukka T, Mäkelä M, Palva E, Roine R, Sarkkinen H, Varonen H, Huovinen P, for the MIKSTRA Collaborative Study Group: The Antimicrobial Treatment Strategies (MIKSTRA) Program: A 5-Year Follow-Up of Infection-Specific Antibiotic Use in Primary Health Care and the Effect of Implementation of Treatment Guidelines. Clin Infect Dis 2006;42:1221-1230.
  46. Salmi M, Jalkanen S: Developmental regulation of the adhesive and enzymatic activity of vascular adhesion protein-1 (VAP-1) in humans. Blood 2006;108:1555-1561.
  47. Siljander T, Toropainen M, Muotiala A, Hoe N, Musser J, Vuopio-Varkila J: emm typing of invasive T28 group A streptococci, 1995-2004, Finland. J Med Microbiol 2006;55:1701-1707.
  48. Song Y, Könönen E, Rautio M, Liu C, Bryk A, Eerola E, Finegold S: Alistipes onderdonkii sp. nov. and Alistipes shahii sp. nov., of human origin. International journal of systematic and evolutionary microbiology 2006;56:1985-1990.
  49. Swaminathan B, Gerner-Smidt P, Ng L, Lukinmaa S, Kam K, Pérez GE, Binsztein N: Building PulseNet International: An interconnected system of Laboratory Networks to Facilitate Timely Public Health Recognition and Response to Foodborne Disease Outbreaks and Emerging Foodborne Diseases. Foodborne Pathogens and Disease 2006;3:36-50.
  50. Tsitko I, Rahkila R, Priha O, Ali-Vehmas T, Terefework Z, Soini H, Salkinoja-Salonen MS: Isolation and automated ribotyping of Mycobacterium lentiflavum from drinking water distribution system and clinical specimens. FEMS MICROBIOL LETT 2006;256:236-243.
  51. Vainio A, Fagerlund R, Melén K, Lehtinen M, Julkunen I, Virolainen A: Serum antibodies to putative proteinase maturation protein A in children with acute otitis media. Vaccine 2006;24:1792-1799.
  52. Yegutkin GG, Mikhailov A, Samburski SS, Jalkanen S: The Detection of Micromolar Pericellular ATP Pool on Lymphocyte Surface by Using Lymphoid Ecto-Adenylate Kinase as Intrinsic ATP Sensor. MOL BIOL CELL 2006;17:3378-3385.
  53. Yegutkin GG, Samburski SS, Jalkanen S, Novak I: ATP-consuming and ATP-generating Enzymes Secreted by Pancreas. J Biol Chem 2006;281:29441-29447.
  54. Yu PH, Lu L, Fan H, Kazachkov M, Jiang Z, Jalkanen S, Stolen C: Involvement of Semicarbazide-Sensitive Amine Oxidase-Mediated Deamination in Lipopolysaccharide-Induced Pulmonary Inflammation. AM J PATHOL 2006;168:718-726.

B. Original articles and reviews published in domestic languages

  1. Haukka K, Siitonen A: Shigellojen mikrobilääkeresistenssi on lisääntynyt. Kansanterveys - the Bulletin of National Public Health Institute of Finland 2006(8):12-13.
  2. Huovinen E, Kuusi M, Sihvonen L, Haukka K, Siitonen A: Yersiniainfektiot Suomessa 1995-2005. Suom Lääkäril 2006;46:4813-4818.
  3. Huovinen E, Sihvonen L: Valtakunnallinen Yersinia enterocolitica –tutkimus käynnistynyt. Kansanterveys - the Bulletin of National Public Health Institute of Finland 2006(1):15-16.
  4. Huovinen P: Käytetäänkö mikrobilääkkeitä liikaa? Suom Lääkäril 2006;61:1831-1832.
  5. Huovinen P, Paakkari P, Klaukka T, Palva E: Bakteerilääkkeiden kulutus laskusuunnassa. Suom Lääkäril 2006;61:2976-2979.
  6. Jalava K, Hakkinen M, Valkonen M, Nakari U, Palo T, Hallanvuo S, Ollgren J, Siitonen A, Nuorti P: Toistuvien yersiniaepidemioiden levittäjä löytyi porkkanaraasteesta. Duodecim 2006;122:21-23.
  7. Kainulainen K, Kuusi M, Eklund M, Siitonen A: Makkaran aiheuttama EHEC-epidemia Norjassa. Kansanterveys - the Bulletin of National Public Health Institute of Finland 2006(4):19-19.
  8. Kerttula A, Lyytikäinen O, Virolainen-Julkunen A, Vuopio-Varkila J: Perimätutkimukset valaisevat Suomen huonontuneen MRSA-tilanteen taustaa. Suom Lääkäril 2006;61:2383-7.
  9. Lyytikäinen O, Kardén-Lilja M, Vuopio-Varkila: Avohoidon MRSA: lisää haasteita torjuntatyöhön. Kansanterveys - the Bulletin of National Public Health Institute of Finland 2006(3):12-14.
  10. Rimhanen-Finne R, Makary P, Pajunen S, Lyytikäinen O, Kuusi M, Sihvonen L, Haukka K, Siitonen A, Hallanvuo S: Yersinia pseudotuberculosis aiheuttanut kaksi porkkanavälitteistä epidemiaa tänä vuonna. Kansanterveys - the Bulletin of National Public Health Institute of Finland 2006(9):15-16.
  11. Rimhanen-Finne R, Makary P, Pajunen S, Lyytikäinen O, Kuusi M, Sihvonen L, Haukka K, Siitonen A, Hallanvuo S: Yersinia pseudotuberculosis aiheuttanut kaksi porkkanavälitteistä epidemiaa tänä vuonna. Kansanterveys - the Bulletin of National Public Health Institute of Finland 2006(9):15-16.
  12. Salmi M: Valkosoluliikenteen salpaajat kliinisessä käytössä. Duodecim 2006;122:877-879.
  13. Siitonen A: Enter-net – kansainväinen Salmonella-, EHEC- ja Campylobacter- epidemioiden seurantaverkko. Kansanterveys - the Bulletin of National Public Health Institute of Finland 2006;5:20-21.
  14. Siitonen A: Salmonellojen epidemiologiaa 1995-2005. Kansanterveys - the Bulletin of National Public Health Institute of Finland 2006(10):15-16.
  15. Soini H: Tuberkuloosin epidemiologinen jäljitys. Duodecim 2006;122:1276-1277.
  16. Suonpää J, Alho O, Ertama L, Huovinen P, Korppi M, Mattila K, Penttilä M, Pitkäranta A, Savolainen S, Varonen H: Sivuontelotulehdus. Duodecim 2006;122:2757-2758.

C. Textbooks and chapters in textbooks, reports and proceedings

  1. Tartuntataudit Suomessa 2005. 2006. 54 p. (Publications of National Public Health Institute, Series B 14/2006).
  2. Hannuksela M, Huovinen P, Huttunen M, Jalanko H, Mustajoki P, Saarelma O, Tiitinen A: Terve ihminen - Suomalainen lääkärikirja. Porvoo: WSOY, WS Bookwell Oy, 2006. 448 p.
  3. Huttunen A, Johansson T, Kostamo P, Kuronen H, Laaksonen T, Laihonen M, Lievonen S, Myllyniemi A, Niskanen T, Ranta J, Rosengren H, Siitonen A, Tuominen P, Varimo K, Varjonen M: Salmonellavalvonta ja salmonellan esiintyminen 1995-2004. In: . Helsinki: Evira, 2006. (Eviran julkaisuja 3/2006/2006).
  4. Jalkanen S, Salmi M: Lymphocyte interaction with microvascular endothelium. In: Shepro D ed. Microvascular Research: Biology and Pathology. Amsterdam, Boston: Elsevier Academic Press, 2006:519-522.
  5. Jalkanen S, Salmi M: Regulation of lymphocyte responses, cell trafficking and lymphoid organ development. In: Ochs HD, Smith CIE, Puck JM ed. Primary Immunodeficiency Diseases. A Molecular & Cellular Approach. 2nd ed. Oxford: Oxford University Press, 2006:93-102.
  6. Niskanen T, Johansson T, Kuusi M, Raahenmaa M, Siitonen A, Tuominen P: Ruokamyrkytykset Suomessa vuonna 2005. Helsinki: Evira Elintarvikehygienia, 2006. 44 p. (Eviran julkaisuja 2/2006/2006).
  7. Vuopio-Varkila J, Kotilainen P: Methicillin-resistant Staphylococcus aureus (MRSA). Helsinki: Kustannus Oy Duodecim, 2006. 1598 p. (Lääkärin Käsikirja 2006 8. uudistettu /2006).

D. Other publications

  1. Kupila L, Rantakokko-Jalava K, Jalava J, Peltonen R, Marttila RJ, Kotilainen E, Kotilainen P: Brain abscess caused by Mycoplasma hominis: A clinically recognizable entity? European Journal of Neurology 2006;13:550-551.
  2. Strandén P, Myllys R, Takkinen J, Björkman Y, Nissinen A, Leinikki P, Siitonen A: The impact of laboratory expertise in diagnostic microbiology as viewed from the EQA perspective. Labquality News 2006(1):13.

E. Theses

  1. Maksimow M: Dendritic cell vaccination in the induction of immunity or tolerance [dissertation]. Turku: Turun Ylipisto, 2006. 102 p. (Medica - Odontologica D - osa 702/2006).
  2. Niemelä J: Control of Inflammation, Leukocyte Trafficking and Endothelial Barrier Function by CD73 [dissertation]. Turku: Turun Yliopisto, 2006. 126 p. (Medica - Odontologica D - osa 697/2006).
  3. Rautakorpi U: Common Infections in Finnish Primary Health Care [dissertation]. Tampere: Tampereen Yliopisto, 2006. 130 p. (Acta Universitatis Tamperensis 1137/2006).