response: (basemi1 == '1') 
covariates: age1 sex 
SNP: 10Q11_21_MG_458 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4350  -0.8511  -0.7372   1.2308   2.5344  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -11.753205   0.445818 -26.363  < 2e-16
allele[notmissing]                       0.010270   0.079060   0.130 0.896649
z[notmissing, ]1                         0.123113   0.006298  19.547  < 2e-16
z[notmissing, ]2                         1.393733   0.138759  10.044  < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03   1.223029   0.156128   7.833 4.75e-15
as.factor(ruaco[notmissing])FIN-EAS_24   0.853183   0.122471   6.966 3.25e-12
as.factor(ruaco[notmissing])FIN-WES_03   0.377098   0.190746   1.977 0.048046
as.factor(ruaco[notmissing])FIN-WES_24   0.082059   0.153823   0.533 0.593710
as.factor(ruaco[notmissing])FRA-LIL_21  -2.302156   0.606327  -3.797 0.000147
as.factor(ruaco[notmissing])FRA-STR_21  -2.334264   0.523740  -4.457 8.31e-06
as.factor(ruaco[notmissing])FRA-TOU_21  -2.803945   0.726779  -3.858 0.000114
as.factor(ruaco[notmissing])SWE-NSW_02   0.040762   0.300806   0.136 0.892209
as.factor(ruaco[notmissing])SWE-NSW_03   0.179737   0.206780   0.869 0.384727
as.factor(ruaco[notmissing])UNK-BEL_21  -0.663688   0.214229  -3.098 0.001948
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 *  
as.factor(ruaco[notmissing])FIN-WES_24    
as.factor(ruaco[notmissing])FRA-LIL_21 ***
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 ***
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03    
as.factor(ruaco[notmissing])UNK-BEL_21 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4327.6  on 3010  degrees of freedom
Residual deviance: 3468.1  on 2997  degrees of freedom
AIC: 3496.1

Number of Fisher Scoring iterations: 5

Updated on 2008-06-04