response: (basemi1 == '1') 
covariates: age1 sex 
SNP: 19Q12_MG_446 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4464  -0.8587  -0.7387   1.2441   2.5536  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -11.571241   0.444059 -26.058  < 2e-16
allele[notmissing]                       0.119901   0.079488   1.508  0.13145
z[notmissing, ]1                         0.122312   0.006262  19.533  < 2e-16
z[notmissing, ]2                         1.384377   0.138144  10.021  < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03   1.178602   0.156169   7.547 4.46e-14
as.factor(ruaco[notmissing])FIN-EAS_24   0.817098   0.123114   6.637 3.20e-11
as.factor(ruaco[notmissing])FIN-WES_03   0.290269   0.191772   1.514  0.13012
as.factor(ruaco[notmissing])FIN-WES_24   0.059351   0.151866   0.391  0.69594
as.factor(ruaco[notmissing])FRA-LIL_21  -2.369341   0.608506  -3.894 9.87e-05
as.factor(ruaco[notmissing])FRA-STR_21  -2.668583   0.597953  -4.463 8.09e-06
as.factor(ruaco[notmissing])FRA-TOU_21  -2.865167   0.726216  -3.945 7.97e-05
as.factor(ruaco[notmissing])SWE-NSW_02   0.213503   0.276095   0.773  0.43935
as.factor(ruaco[notmissing])SWE-NSW_03   0.101912   0.204108   0.499  0.61757
as.factor(ruaco[notmissing])UNK-BEL_21  -0.697076   0.214441  -3.251  0.00115
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03    
as.factor(ruaco[notmissing])FIN-WES_24    
as.factor(ruaco[notmissing])FRA-LIL_21 ***
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 ***
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03    
as.factor(ruaco[notmissing])UNK-BEL_21 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4337.9  on 3004  degrees of freedom
Residual deviance: 3472.5  on 2991  degrees of freedom
AIC: 3500.5

Number of Fisher Scoring iterations: 5

Updated on 2008-06-04