response: (basemi1 == '1')
covariates: age1 sex
SNP: CELSR2_MG_438
Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"),
offset = log(1/prob[notmissing]))
Deviance Residuals:
Min 1Q Median 3Q Max
-1.4297 -0.8541 -0.7337 1.2327 2.5891
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -11.755955 0.441262 -26.642 < 2e-16
allele[notmissing] 0.112727 0.073217 1.540 0.12365
z[notmissing, ]1 0.122229 0.006247 19.565 < 2e-16
z[notmissing, ]2 1.406212 0.137917 10.196 < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03 1.206724 0.155527 7.759 8.56e-15
as.factor(ruaco[notmissing])FIN-EAS_24 0.842279 0.122607 6.870 6.43e-12
as.factor(ruaco[notmissing])FIN-WES_03 0.316495 0.191441 1.653 0.09829
as.factor(ruaco[notmissing])FIN-WES_24 0.085696 0.151825 0.564 0.57246
as.factor(ruaco[notmissing])FRA-LIL_21 -2.397837 0.607494 -3.947 7.91e-05
as.factor(ruaco[notmissing])FRA-STR_21 -2.452707 0.522325 -4.696 2.66e-06
as.factor(ruaco[notmissing])FRA-TOU_21 -2.912594 0.725566 -4.014 5.96e-05
as.factor(ruaco[notmissing])SWE-NSW_02 0.229192 0.275427 0.832 0.40533
as.factor(ruaco[notmissing])SWE-NSW_03 0.137358 0.203354 0.675 0.49938
as.factor(ruaco[notmissing])UNK-BEL_21 -0.595486 0.207590 -2.869 0.00412
(Intercept) ***
allele[notmissing]
z[notmissing, ]1 ***
z[notmissing, ]2 ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 .
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21 ***
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 ***
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21 **
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 4393.4 on 3047 degrees of freedom
Residual deviance: 3516.6 on 3034 degrees of freedom
AIC: 3544.6
Number of Fisher Scoring iterations: 5
Updated on 2008-06-04