response: (basemi1 == '1') 
covariates: age1 sex 
SNP: MIA3_MG_454 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4214  -0.8488  -0.7346   1.2295   2.5757  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -11.695320   0.445263 -26.266  < 2e-16
allele[notmissing]                      -0.101449   0.082574  -1.229 0.219226
z[notmissing, ]1                         0.120624   0.006247  19.310  < 2e-16
z[notmissing, ]2                         1.429003   0.139332  10.256  < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03   1.210814   0.157123   7.706 1.30e-14
as.factor(ruaco[notmissing])FIN-EAS_24   0.865216   0.122101   7.086 1.38e-12
as.factor(ruaco[notmissing])FIN-WES_03   0.311711   0.193024   1.615 0.106337
as.factor(ruaco[notmissing])FIN-WES_24   0.086887   0.153564   0.566 0.571529
as.factor(ruaco[notmissing])FRA-LIL_21  -2.311888   0.606317  -3.813 0.000137
as.factor(ruaco[notmissing])FRA-STR_21  -2.344324   0.524081  -4.473 7.71e-06
as.factor(ruaco[notmissing])FRA-TOU_21  -2.874874   0.726121  -3.959 7.52e-05
as.factor(ruaco[notmissing])SWE-NSW_02   0.205020   0.275126   0.745 0.456160
as.factor(ruaco[notmissing])SWE-NSW_03   0.148673   0.203449   0.731 0.464925
as.factor(ruaco[notmissing])UNK-BEL_21  -0.663180   0.211992  -3.128 0.001758
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03    
as.factor(ruaco[notmissing])FIN-WES_24    
as.factor(ruaco[notmissing])FRA-LIL_21 ***
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 ***
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03    
as.factor(ruaco[notmissing])UNK-BEL_21 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4326.4  on 3018  degrees of freedom
Residual deviance: 3482.8  on 3005  degrees of freedom
AIC: 3510.8

Number of Fisher Scoring iterations: 5

Updated on 2008-06-04