response: (basemi1 == '1') 
covariates: age1 sex 
SNP: MTHFD1L_MG_449 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4158  -0.8495  -0.7361   1.2314   2.5478  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -11.618012   0.472364 -24.595  < 2e-16
allele[notmissing]                       0.108033   0.182504   0.592 0.553885
z[notmissing, ]1                         0.122118   0.006236  19.582  < 2e-16
z[notmissing, ]2                         1.429548   0.138567  10.317  < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03   1.217369   0.155916   7.808 5.82e-15
as.factor(ruaco[notmissing])FIN-EAS_24   0.867116   0.122067   7.104 1.22e-12
as.factor(ruaco[notmissing])FIN-WES_03   0.345055   0.191617   1.801 0.071741
as.factor(ruaco[notmissing])FIN-WES_24   0.094420   0.153186   0.616 0.537648
as.factor(ruaco[notmissing])FRA-LIL_21  -2.311451   0.606700  -3.810 0.000139
as.factor(ruaco[notmissing])FRA-STR_21  -2.356148   0.523366  -4.502 6.73e-06
as.factor(ruaco[notmissing])FRA-TOU_21  -2.849748   0.726082  -3.925 8.68e-05
as.factor(ruaco[notmissing])SWE-NSW_02   0.232913   0.274949   0.847 0.396932
as.factor(ruaco[notmissing])SWE-NSW_03   0.157569   0.203574   0.774 0.438924
as.factor(ruaco[notmissing])UNK-BEL_21  -0.648617   0.211666  -3.064 0.002182
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 .  
as.factor(ruaco[notmissing])FIN-WES_24    
as.factor(ruaco[notmissing])FRA-LIL_21 ***
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 ***
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03    
as.factor(ruaco[notmissing])UNK-BEL_21 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4363.8  on 3036  degrees of freedom
Residual deviance: 3499.1  on 3023  degrees of freedom
AIC: 3527.1

Number of Fisher Scoring iterations: 5

Updated on 2008-06-04