response: (basemi1 == '1')
covariates: age1 sex
SNP: SMAD3_MG_452
Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"),
offset = log(1/prob[notmissing]))
Deviance Residuals:
Min 1Q Median 3Q Max
-1.4328 -0.8508 -0.7340 1.2450 2.5705
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -11.771183 0.440871 -26.700 < 2e-16
allele[notmissing] -0.112323 0.071438 -1.572 0.115879
z[notmissing, ]1 0.122082 0.006235 19.579 < 2e-16
z[notmissing, ]2 1.417188 0.138183 10.256 < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03 1.222229 0.156130 7.828 4.95e-15
as.factor(ruaco[notmissing])FIN-EAS_24 0.862742 0.122057 7.068 1.57e-12
as.factor(ruaco[notmissing])FIN-WES_03 0.368445 0.190430 1.935 0.053014
as.factor(ruaco[notmissing])FIN-WES_24 0.099084 0.153216 0.647 0.517830
as.factor(ruaco[notmissing])FRA-LIL_21 -2.263155 0.606942 -3.729 0.000192
as.factor(ruaco[notmissing])FRA-STR_21 -2.350589 0.523437 -4.491 7.10e-06
as.factor(ruaco[notmissing])FRA-TOU_21 -2.864769 0.726127 -3.945 7.97e-05
as.factor(ruaco[notmissing])SWE-NSW_02 0.252275 0.275469 0.916 0.359771
as.factor(ruaco[notmissing])SWE-NSW_03 0.163968 0.203632 0.805 0.420695
as.factor(ruaco[notmissing])UNK-BEL_21 -0.617502 0.212520 -2.906 0.003665
(Intercept) ***
allele[notmissing]
z[notmissing, ]1 ***
z[notmissing, ]2 ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 .
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21 ***
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 ***
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21 **
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 4368.6 on 3037 degrees of freedom
Residual deviance: 3502.5 on 3024 degrees of freedom
AIC: 3530.5
Number of Fisher Scoring iterations: 5
Updated on 2008-06-04