response: (basestr1 == '1')
covariates: age1 sex
SNP: 10Q11_21_MG_458
Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"),
offset = log(1/prob[notmissing]))
Deviance Residuals:
Min 1Q Median 3Q Max
-1.1735 -0.6440 -0.5989 -0.1994 2.9731
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -9.281382 0.472827 -19.630 < 2e-16
allele[notmissing] 0.036177 0.097372 0.372 0.710241
z[notmissing, ]1 0.088194 0.006695 13.172 < 2e-16
z[notmissing, ]2 0.462901 0.142666 3.245 0.001176
as.factor(ruaco[notmissing])FIN-EAS_03 0.563771 0.201426 2.799 0.005128
as.factor(ruaco[notmissing])FIN-EAS_24 0.499511 0.150791 3.313 0.000924
as.factor(ruaco[notmissing])FIN-WES_03 0.439032 0.206712 2.124 0.033680
as.factor(ruaco[notmissing])FIN-WES_24 -0.046248 0.184729 -0.250 0.802310
as.factor(ruaco[notmissing])FRA-LIL_21 -3.053817 1.020514 -2.992 0.002768
as.factor(ruaco[notmissing])FRA-STR_21 -2.645692 0.725904 -3.645 0.000268
as.factor(ruaco[notmissing])FRA-TOU_21 -3.142168 1.015233 -3.095 0.001968
as.factor(ruaco[notmissing])SWE-NSW_02 0.052249 0.319195 0.164 0.869975
as.factor(ruaco[notmissing])SWE-NSW_03 0.027934 0.235024 0.119 0.905389
as.factor(ruaco[notmissing])UNK-BEL_21 -3.118124 0.718756 -4.338 1.44e-05
(Intercept) ***
allele[notmissing]
z[notmissing, ]1 ***
z[notmissing, ]2 **
as.factor(ruaco[notmissing])FIN-EAS_03 **
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 *
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21 **
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 **
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 2857.1 on 2715 degrees of freedom
Residual deviance: 2428.6 on 2702 degrees of freedom
AIC: 2456.6
Number of Fisher Scoring iterations: 6
Updated on 2008-06-04