response: (basestr1 == '1')
covariates: age1 sex
SNP: 19Q12_MG_446
Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"),
offset = log(1/prob[notmissing]))
Deviance Residuals:
Min 1Q Median 3Q Max
-1.1782 -0.6573 -0.5987 -0.1947 2.9506
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -9.005901 0.473165 -19.033 < 2e-16
allele[notmissing] 0.117708 0.098009 1.201 0.229752
z[notmissing, ]1 0.085919 0.006689 12.845 < 2e-16
z[notmissing, ]2 0.460474 0.143378 3.212 0.001320
as.factor(ruaco[notmissing])FIN-EAS_03 0.513073 0.201868 2.542 0.011034
as.factor(ruaco[notmissing])FIN-EAS_24 0.433834 0.152812 2.839 0.004526
as.factor(ruaco[notmissing])FIN-WES_03 0.377902 0.206880 1.827 0.067749
as.factor(ruaco[notmissing])FIN-WES_24 -0.086896 0.184444 -0.471 0.637551
as.factor(ruaco[notmissing])FRA-LIL_21 -3.141371 1.022245 -3.073 0.002119
as.factor(ruaco[notmissing])FRA-STR_21 -2.672828 0.726124 -3.681 0.000232
as.factor(ruaco[notmissing])FRA-TOU_21 -3.207957 1.014915 -3.161 0.001573
as.factor(ruaco[notmissing])SWE-NSW_02 0.040213 0.310632 0.129 0.896998
as.factor(ruaco[notmissing])SWE-NSW_03 -0.039954 0.231514 -0.173 0.862984
as.factor(ruaco[notmissing])UNK-BEL_21 -3.154869 0.718958 -4.388 1.14e-05
(Intercept) ***
allele[notmissing]
z[notmissing, ]1 ***
z[notmissing, ]2 **
as.factor(ruaco[notmissing])FIN-EAS_03 *
as.factor(ruaco[notmissing])FIN-EAS_24 **
as.factor(ruaco[notmissing])FIN-WES_03 .
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21 **
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 **
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 2841.3 on 2703 degrees of freedom
Residual deviance: 2421.3 on 2690 degrees of freedom
AIC: 2449.3
Number of Fisher Scoring iterations: 6
Updated on 2008-06-04