response: (basestr1 == '1')
covariates: age1 sex
SNP: CELSR2_MG_438
Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"),
offset = log(1/prob[notmissing]))
Deviance Residuals:
Min 1Q Median 3Q Max
-1.1592 -0.6479 -0.6027 -0.1915 2.9913
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -9.269612 0.471657 -19.653 < 2e-16
allele[notmissing] 0.061670 0.090539 0.681 0.495781
z[notmissing, ]1 0.087667 0.006712 13.061 < 2e-16
z[notmissing, ]2 0.486166 0.143055 3.398 0.000678
as.factor(ruaco[notmissing])FIN-EAS_03 0.538193 0.201506 2.671 0.007566
as.factor(ruaco[notmissing])FIN-EAS_24 0.472803 0.151363 3.124 0.001786
as.factor(ruaco[notmissing])FIN-WES_03 0.415668 0.206141 2.016 0.043756
as.factor(ruaco[notmissing])FIN-WES_24 -0.068557 0.184177 -0.372 0.709717
as.factor(ruaco[notmissing])FRA-LIL_21 -3.160699 1.021541 -3.094 0.001974
as.factor(ruaco[notmissing])FRA-STR_21 -2.749372 0.724884 -3.793 0.000149
as.factor(ruaco[notmissing])FRA-TOU_21 -3.246792 1.014466 -3.200 0.001372
as.factor(ruaco[notmissing])SWE-NSW_02 0.065433 0.309949 0.211 0.832802
as.factor(ruaco[notmissing])SWE-NSW_03 -0.007682 0.230649 -0.033 0.973432
as.factor(ruaco[notmissing])UNK-BEL_21 -3.141309 0.718648 -4.371 1.24e-05
(Intercept) ***
allele[notmissing]
z[notmissing, ]1 ***
z[notmissing, ]2 ***
as.factor(ruaco[notmissing])FIN-EAS_03 **
as.factor(ruaco[notmissing])FIN-EAS_24 **
as.factor(ruaco[notmissing])FIN-WES_03 *
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21 **
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 **
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 2886.1 on 2743 degrees of freedom
Residual deviance: 2447.3 on 2730 degrees of freedom
AIC: 2475.3
Number of Fisher Scoring iterations: 6
Updated on 2008-06-04