response: (basestr1 == '1')
covariates: age1 sex
SNP: MIA3_MG_454
Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"),
offset = log(1/prob[notmissing]))
Deviance Residuals:
Min 1Q Median 3Q Max
-1.1977 -0.6450 -0.5988 -0.1954 2.9772
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -9.186241 0.470872 -19.509 < 2e-16
allele[notmissing] -0.002060 0.099300 -0.021 0.983447
z[notmissing, ]1 0.087032 0.006668 13.053 < 2e-16
z[notmissing, ]2 0.463000 0.142349 3.253 0.001144
as.factor(ruaco[notmissing])FIN-EAS_03 0.582229 0.201619 2.888 0.003880
as.factor(ruaco[notmissing])FIN-EAS_24 0.502646 0.150336 3.343 0.000827
as.factor(ruaco[notmissing])FIN-WES_03 0.450936 0.206189 2.187 0.028742
as.factor(ruaco[notmissing])FIN-WES_24 -0.052269 0.184553 -0.283 0.777007
as.factor(ruaco[notmissing])FRA-LIL_21 -3.058910 1.020448 -2.998 0.002721
as.factor(ruaco[notmissing])FRA-STR_21 -2.635743 0.726228 -3.629 0.000284
as.factor(ruaco[notmissing])FRA-TOU_21 -3.191165 1.014863 -3.144 0.001664
as.factor(ruaco[notmissing])SWE-NSW_02 0.056507 0.309957 0.182 0.855343
as.factor(ruaco[notmissing])SWE-NSW_03 -0.002471 0.231321 -0.011 0.991477
as.factor(ruaco[notmissing])UNK-BEL_21 -3.123801 0.718896 -4.345 1.39e-05
(Intercept) ***
allele[notmissing]
z[notmissing, ]1 ***
z[notmissing, ]2 **
as.factor(ruaco[notmissing])FIN-EAS_03 **
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 *
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21 **
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 **
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 2865.4 on 2723 degrees of freedom
Residual deviance: 2440.7 on 2710 degrees of freedom
AIC: 2468.7
Number of Fisher Scoring iterations: 6
Updated on 2008-06-04