response: (basestr1 == '1')
covariates: age1 sex
SNP: MTHFD1L_MG_449
Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"),
offset = log(1/prob[notmissing]))
Deviance Residuals:
Min 1Q Median 3Q Max
-1.1898 -0.6467 -0.5999 -0.1962 2.9788
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -9.239303 0.512793 -18.018 < 2e-16
allele[notmissing] -0.015027 0.229345 -0.066 0.947758
z[notmissing, ]1 0.087551 0.006656 13.154 < 2e-16
z[notmissing, ]2 0.474875 0.142070 3.343 0.000830
as.factor(ruaco[notmissing])FIN-EAS_03 0.547565 0.201187 2.722 0.006495
as.factor(ruaco[notmissing])FIN-EAS_24 0.503634 0.150180 3.354 0.000798
as.factor(ruaco[notmissing])FIN-WES_03 0.429375 0.206236 2.082 0.037346
as.factor(ruaco[notmissing])FIN-WES_24 -0.053002 0.184425 -0.287 0.773812
as.factor(ruaco[notmissing])FRA-LIL_21 -3.059209 1.020430 -2.998 0.002718
as.factor(ruaco[notmissing])FRA-STR_21 -2.670268 0.725626 -3.680 0.000233
as.factor(ruaco[notmissing])FRA-TOU_21 -3.191712 1.014790 -3.145 0.001660
as.factor(ruaco[notmissing])SWE-NSW_02 0.061384 0.309355 0.198 0.842713
as.factor(ruaco[notmissing])SWE-NSW_03 -0.001191 0.230660 -0.005 0.995880
as.factor(ruaco[notmissing])UNK-BEL_21 -3.130848 0.718636 -4.357 1.32e-05
(Intercept) ***
allele[notmissing]
z[notmissing, ]1 ***
z[notmissing, ]2 ***
as.factor(ruaco[notmissing])FIN-EAS_03 **
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 *
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21 **
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 **
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 2881.4 on 2739 degrees of freedom
Residual deviance: 2449.7 on 2726 degrees of freedom
AIC: 2477.7
Number of Fisher Scoring iterations: 6
Updated on 2008-06-04