response: (basestr1 == '1')
covariates: age1 sex
SNP: SMAD3_MG_452
Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"),
offset = log(1/prob[notmissing]))
Deviance Residuals:
Min 1Q Median 3Q Max
-1.2081 -0.6487 -0.5993 -0.1963 2.9568
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -9.283642 0.467188 -19.871 < 2e-16
allele[notmissing] -0.099840 0.089117 -1.120 0.262578
z[notmissing, ]1 0.087515 0.006658 13.143 < 2e-16
z[notmissing, ]2 0.474916 0.142133 3.341 0.000834
as.factor(ruaco[notmissing])FIN-EAS_03 0.558572 0.201377 2.774 0.005541
as.factor(ruaco[notmissing])FIN-EAS_24 0.507239 0.150225 3.377 0.000734
as.factor(ruaco[notmissing])FIN-WES_03 0.430845 0.206235 2.089 0.036699
as.factor(ruaco[notmissing])FIN-WES_24 -0.046709 0.184509 -0.253 0.800150
as.factor(ruaco[notmissing])FRA-LIL_21 -3.018932 1.020880 -2.957 0.003105
as.factor(ruaco[notmissing])FRA-STR_21 -2.656851 0.725734 -3.661 0.000251
as.factor(ruaco[notmissing])FRA-TOU_21 -3.198471 1.014804 -3.152 0.001623
as.factor(ruaco[notmissing])SWE-NSW_02 0.084102 0.310037 0.271 0.786189
as.factor(ruaco[notmissing])SWE-NSW_03 0.015554 0.231152 0.067 0.946352
as.factor(ruaco[notmissing])UNK-BEL_21 -3.103189 0.719019 -4.316 1.59e-05
(Intercept) ***
allele[notmissing]
z[notmissing, ]1 ***
z[notmissing, ]2 ***
as.factor(ruaco[notmissing])FIN-EAS_03 **
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 *
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21 **
as.factor(ruaco[notmissing])FRA-STR_21 ***
as.factor(ruaco[notmissing])FRA-TOU_21 **
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 2881.3 on 2738 degrees of freedom
Residual deviance: 2448.1 on 2725 degrees of freedom
AIC: 2476.1
Number of Fisher Scoring iterations: 6
Updated on 2008-06-04