response: (chd1 %in% c('1','2'))
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: CELSR2_MG_438
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing,
selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=3030 (53 observations deleted due to missingness)
coef exp(coef) se(coef) robust se
allele[notmissing] -0.03736 0.963 0.05612 0.07267
wz[notmissing, selectedcovariates]1 0.20241 1.224 0.02549 0.04432
wz[notmissing, selectedcovariates]2 -0.89198 0.410 0.11448 0.15024
wz[notmissing, selectedcovariates]3 0.01211 1.012 0.00794 0.01021
wz[notmissing, selectedcovariates]4 0.01366 1.014 0.00229 0.00305
wz[notmissing, selectedcovariates]5 0.53800 1.713 0.07746 0.11002
wz[notmissing, selectedcovariates]6 0.78281 2.188 0.10169 0.15591
wruaco[notmissing]FIN-EAS_03 0.74526 2.107 0.13107 0.17344
wruaco[notmissing]FIN-EAS_24 0.31899 1.376 0.12032 0.15799
wruaco[notmissing]FIN-WES_03 0.26941 1.309 0.14324 0.18385
wruaco[notmissing]FIN-WES_24 0.18311 1.201 0.12911 0.18705
wruaco[notmissing]FRA-LIL_21 -0.02239 0.978 0.22374 0.34081
wruaco[notmissing]FRA-STR_21 0.00180 1.002 0.19894 0.27137
wruaco[notmissing]FRA-TOU_21 0.48294 1.621 0.20652 0.27764
wruaco[notmissing]SWE-NSW_02 0.42126 1.524 0.21312 0.29062
wruaco[notmissing]SWE-NSW_03 -0.18337 0.832 0.30784 0.36929
wruaco[notmissing]UNK-BEL_21 0.64016 1.897 0.14545 0.19863
z p
allele[notmissing] -0.51414 6.1e-01
wz[notmissing, selectedcovariates]1 4.56732 4.9e-06
wz[notmissing, selectedcovariates]2 -5.93715 2.9e-09
wz[notmissing, selectedcovariates]3 1.18632 2.4e-01
wz[notmissing, selectedcovariates]4 4.48278 7.4e-06
wz[notmissing, selectedcovariates]5 4.88987 1.0e-06
wz[notmissing, selectedcovariates]6 5.02079 5.1e-07
wruaco[notmissing]FIN-EAS_03 4.29692 1.7e-05
wruaco[notmissing]FIN-EAS_24 2.01907 4.3e-02
wruaco[notmissing]FIN-WES_03 1.46538 1.4e-01
wruaco[notmissing]FIN-WES_24 0.97897 3.3e-01
wruaco[notmissing]FRA-LIL_21 -0.06570 9.5e-01
wruaco[notmissing]FRA-STR_21 0.00664 9.9e-01
wruaco[notmissing]FRA-TOU_21 1.73944 8.2e-02
wruaco[notmissing]SWE-NSW_02 1.44954 1.5e-01
wruaco[notmissing]SWE-NSW_03 -0.49653 6.2e-01
wruaco[notmissing]UNK-BEL_21 3.22293 1.3e-03
exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing] 0.963 1.038 0.835 1.11
wz[notmissing, selectedcovariates]1 1.224 0.817 1.122 1.34
wz[notmissing, selectedcovariates]2 0.410 2.440 0.305 0.55
wz[notmissing, selectedcovariates]3 1.012 0.988 0.992 1.03
wz[notmissing, selectedcovariates]4 1.014 0.986 1.008 1.02
wz[notmissing, selectedcovariates]5 1.713 0.584 1.380 2.12
wz[notmissing, selectedcovariates]6 2.188 0.457 1.612 2.97
wruaco[notmissing]FIN-EAS_03 2.107 0.475 1.500 2.96
wruaco[notmissing]FIN-EAS_24 1.376 0.727 1.009 1.88
wruaco[notmissing]FIN-WES_03 1.309 0.764 0.913 1.88
wruaco[notmissing]FIN-WES_24 1.201 0.833 0.832 1.73
wruaco[notmissing]FRA-LIL_21 0.978 1.023 0.501 1.91
wruaco[notmissing]FRA-STR_21 1.002 0.998 0.589 1.71
wruaco[notmissing]FRA-TOU_21 1.621 0.617 0.941 2.79
wruaco[notmissing]SWE-NSW_02 1.524 0.656 0.862 2.69
wruaco[notmissing]SWE-NSW_03 0.832 1.201 0.404 1.72
wruaco[notmissing]UNK-BEL_21 1.897 0.527 1.285 2.80
Rsquare= 0.113 (max possible= 0.995 )
Likelihood ratio test= 363 on 17 df, p=0
Wald test = 173 on 17 df, p=0
Score (logrank) test = 393 on 17 df, p=0, Robust = 191 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04