response: (chd1 %in% c('1','2')) 
covariates: dsmoker 
SNP: 10Q11_21_MG_458 
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing, 
    selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) + 
    cluster(wdata$id[notmissing]), weights = weight[notmissing], 
    robust = TRUE)

  n= 3054 
                                      coef exp(coef) se(coef) robust se      z
allele[notmissing]                  0.0225     1.023   0.0600    0.0752  0.299
wz[notmissing, selectedcovariates]  0.5041     1.655   0.0757    0.1015  4.967
wruaco[notmissing]FIN-EAS_03        0.7526     2.122   0.1290    0.1614  4.663
wruaco[notmissing]FIN-EAS_24        0.3149     1.370   0.1145    0.1450  2.172
wruaco[notmissing]FIN-WES_03        0.2596     1.296   0.1422    0.1767  1.469
wruaco[notmissing]FIN-WES_24        0.1395     1.150   0.1279    0.1644  0.849
wruaco[notmissing]FRA-LIL_21       -0.2160     0.806   0.2278    0.2991 -0.722
wruaco[notmissing]FRA-STR_21        0.0472     1.048   0.1961    0.2528  0.187
wruaco[notmissing]FRA-TOU_21        0.0950     1.100   0.1984    0.2618  0.363
wruaco[notmissing]SWE-NSW_02        0.4971     1.644   0.2051    0.2553  1.947
wruaco[notmissing]SWE-NSW_03       -0.0831     0.920   0.2943    0.3435 -0.242
wruaco[notmissing]UNK-BEL_21        0.5443     1.723   0.1437    0.1864  2.919
                                         p
allele[notmissing]                 7.6e-01
wz[notmissing, selectedcovariates] 6.8e-07
wruaco[notmissing]FIN-EAS_03       3.1e-06
wruaco[notmissing]FIN-EAS_24       3.0e-02
wruaco[notmissing]FIN-WES_03       1.4e-01
wruaco[notmissing]FIN-WES_24       4.0e-01
wruaco[notmissing]FRA-LIL_21       4.7e-01
wruaco[notmissing]FRA-STR_21       8.5e-01
wruaco[notmissing]FRA-TOU_21       7.2e-01
wruaco[notmissing]SWE-NSW_02       5.1e-02
wruaco[notmissing]SWE-NSW_03       8.1e-01
wruaco[notmissing]UNK-BEL_21       3.5e-03

                                   exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing]                     1.023      0.978     0.883      1.19
wz[notmissing, selectedcovariates]     1.655      0.604     1.357      2.02
wruaco[notmissing]FIN-EAS_03           2.122      0.471     1.547      2.91
wruaco[notmissing]FIN-EAS_24           1.370      0.730     1.031      1.82
wruaco[notmissing]FIN-WES_03           1.296      0.771     0.917      1.83
wruaco[notmissing]FIN-WES_24           1.150      0.870     0.833      1.59
wruaco[notmissing]FRA-LIL_21           0.806      1.241     0.448      1.45
wruaco[notmissing]FRA-STR_21           1.048      0.954     0.639      1.72
wruaco[notmissing]FRA-TOU_21           1.100      0.909     0.658      1.84
wruaco[notmissing]SWE-NSW_02           1.644      0.608     0.997      2.71
wruaco[notmissing]SWE-NSW_03           0.920      1.087     0.469      1.80
wruaco[notmissing]UNK-BEL_21           1.723      0.580     1.196      2.48

Rsquare= 0.027   (max possible= 0.995 )
Likelihood ratio test= 84.6  on 12 df,   p=5.51e-13
Wald test            = 49.3  on 12 df,   p=1.89e-06
Score (logrank) test = 86.5  on 12 df,   p=2.33e-13,   Robust = 46  p=6.94e-06

  (Note: the likelihood ratio and score tests assume independence of
     observations within a cluster, the Wald and robust score tests do not).

Updated on 2008-06-04