response: (chd1 %in% c('1','2')) 
covariates: dsmoker 
SNP: 19Q12_MG_446 
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing, 
    selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) + 
    cluster(wdata$id[notmissing]), weights = weight[notmissing], 
    robust = TRUE)

  n= 3047 
                                       coef exp(coef) se(coef) robust se
allele[notmissing]                  0.06683     1.069   0.0606    0.0772
wz[notmissing, selectedcovariates]  0.49704     1.644   0.0756    0.1016
wruaco[notmissing]FIN-EAS_03        0.72347     2.062   0.1291    0.1622
wruaco[notmissing]FIN-EAS_24        0.31137     1.365   0.1144    0.1455
wruaco[notmissing]FIN-WES_03        0.21545     1.240   0.1426    0.1777
wruaco[notmissing]FIN-WES_24        0.15500     1.168   0.1259    0.1630
wruaco[notmissing]FRA-LIL_21       -0.22507     0.798   0.2206    0.2990
wruaco[notmissing]FRA-STR_21       -0.05132     0.950   0.1996    0.2559
wruaco[notmissing]FRA-TOU_21       -0.00116     0.999   0.2010    0.2623
wruaco[notmissing]SWE-NSW_02        0.47581     1.609   0.2051    0.2551
wruaco[notmissing]SWE-NSW_03       -0.16750     0.846   0.2940    0.3408
wruaco[notmissing]UNK-BEL_21        0.52916     1.698   0.1438    0.1865
                                          z       p
allele[notmissing]                  0.86580 3.9e-01
wz[notmissing, selectedcovariates]  4.89316 9.9e-07
wruaco[notmissing]FIN-EAS_03        4.46114 8.2e-06
wruaco[notmissing]FIN-EAS_24        2.13930 3.2e-02
wruaco[notmissing]FIN-WES_03        1.21251 2.3e-01
wruaco[notmissing]FIN-WES_24        0.95087 3.4e-01
wruaco[notmissing]FRA-LIL_21       -0.75274 4.5e-01
wruaco[notmissing]FRA-STR_21       -0.20057 8.4e-01
wruaco[notmissing]FRA-TOU_21       -0.00442 1.0e+00
wruaco[notmissing]SWE-NSW_02        1.86531 6.2e-02
wruaco[notmissing]SWE-NSW_03       -0.49156 6.2e-01
wruaco[notmissing]UNK-BEL_21        2.83749 4.5e-03

                                   exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing]                     1.069      0.935     0.919      1.24
wz[notmissing, selectedcovariates]     1.644      0.608     1.347      2.01
wruaco[notmissing]FIN-EAS_03           2.062      0.485     1.500      2.83
wruaco[notmissing]FIN-EAS_24           1.365      0.732     1.026      1.82
wruaco[notmissing]FIN-WES_03           1.240      0.806     0.876      1.76
wruaco[notmissing]FIN-WES_24           1.168      0.856     0.848      1.61
wruaco[notmissing]FRA-LIL_21           0.798      1.252     0.444      1.43
wruaco[notmissing]FRA-STR_21           0.950      1.053     0.575      1.57
wruaco[notmissing]FRA-TOU_21           0.999      1.001     0.597      1.67
wruaco[notmissing]SWE-NSW_02           1.609      0.621     0.976      2.65
wruaco[notmissing]SWE-NSW_03           0.846      1.182     0.434      1.65
wruaco[notmissing]UNK-BEL_21           1.698      0.589     1.178      2.45

Rsquare= 0.029   (max possible= 0.995 )
Likelihood ratio test= 89  on 12 df,   p=7.8e-14
Wald test            = 51.7  on 12 df,   p=6.99e-07
Score (logrank) test = 90.6  on 12 df,   p=3.75e-14,   Robust = 48.1  p=3.04e-06

  (Note: the likelihood ratio and score tests assume independence of
     observations within a cluster, the Wald and robust score tests do not).

Updated on 2008-06-04