response: (chd1 %in% c('1','2')) 
covariates: dsmoker 
SNP: MIA3_MG_454 
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing, 
    selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) + 
    cluster(wdata$id[notmissing]), weights = weight[notmissing], 
    robust = TRUE)

  n= 3061 
                                      coef exp(coef) se(coef) robust se       z
allele[notmissing]                 -0.1630     0.850   0.0659    0.0807 -2.0193
wz[notmissing, selectedcovariates]  0.5053     1.658   0.0757    0.1016  4.9712
wruaco[notmissing]FIN-EAS_03        0.7901     2.204   0.1284    0.1617  4.8855
wruaco[notmissing]FIN-EAS_24        0.3260     1.385   0.1139    0.1446  2.2545
wruaco[notmissing]FIN-WES_03        0.2272     1.255   0.1429    0.1774  1.2807
wruaco[notmissing]FIN-WES_24        0.1572     1.170   0.1269    0.1639  0.9590
wruaco[notmissing]FRA-LIL_21       -0.1229     0.884   0.2199    0.2921 -0.4207
wruaco[notmissing]FRA-STR_21        0.0122     1.012   0.1975    0.2546  0.0479
wruaco[notmissing]FRA-TOU_21        0.0370     1.038   0.1986    0.2604  0.1422
wruaco[notmissing]SWE-NSW_02        0.4526     1.572   0.2053    0.2554  1.7721
wruaco[notmissing]SWE-NSW_03       -0.1313     0.877   0.2941    0.3399 -0.3862
wruaco[notmissing]UNK-BEL_21        0.5226     1.686   0.1436    0.1868  2.7976
                                         p
allele[notmissing]                 4.3e-02
wz[notmissing, selectedcovariates] 6.7e-07
wruaco[notmissing]FIN-EAS_03       1.0e-06
wruaco[notmissing]FIN-EAS_24       2.4e-02
wruaco[notmissing]FIN-WES_03       2.0e-01
wruaco[notmissing]FIN-WES_24       3.4e-01
wruaco[notmissing]FRA-LIL_21       6.7e-01
wruaco[notmissing]FRA-STR_21       9.6e-01
wruaco[notmissing]FRA-TOU_21       8.9e-01
wruaco[notmissing]SWE-NSW_02       7.6e-02
wruaco[notmissing]SWE-NSW_03       7.0e-01
wruaco[notmissing]UNK-BEL_21       5.1e-03

                                   exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing]                     0.850      1.177     0.725     0.995
wz[notmissing, selectedcovariates]     1.658      0.603     1.358     2.023
wruaco[notmissing]FIN-EAS_03           2.204      0.454     1.605     3.026
wruaco[notmissing]FIN-EAS_24           1.385      0.722     1.044     1.839
wruaco[notmissing]FIN-WES_03           1.255      0.797     0.886     1.777
wruaco[notmissing]FIN-WES_24           1.170      0.855     0.849     1.614
wruaco[notmissing]FRA-LIL_21           0.884      1.131     0.499     1.568
wruaco[notmissing]FRA-STR_21           1.012      0.988     0.615     1.667
wruaco[notmissing]FRA-TOU_21           1.038      0.964     0.623     1.729
wruaco[notmissing]SWE-NSW_02           1.572      0.636     0.953     2.594
wruaco[notmissing]SWE-NSW_03           0.877      1.140     0.450     1.707
wruaco[notmissing]UNK-BEL_21           1.686      0.593     1.169     2.432

Rsquare= 0.03   (max possible= 0.995 )
Likelihood ratio test= 94.1  on 12 df,   p=7.88e-15
Wald test            = 55.9  on 12 df,   p=1.27e-07
Score (logrank) test = 96.7  on 12 df,   p=2.44e-15,   Robust = 52.3  p=5.48e-07

  (Note: the likelihood ratio and score tests assume independence of
     observations within a cluster, the Wald and robust score tests do not).

Updated on 2008-06-04