response: (chd1 %in% c('1','2')) 
covariates: dsmoker 
SNP: SMAD3_MG_452 
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing, 
    selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) + 
    cluster(wdata$id[notmissing]), weights = weight[notmissing], 
    robust = TRUE)

  n= 3076 
                                      coef exp(coef) se(coef) robust se       z
allele[notmissing]                 -0.0207     0.979   0.0533     0.067 -0.3093
wz[notmissing, selectedcovariates]  0.5005     1.650   0.0754     0.101  4.9582
wruaco[notmissing]FIN-EAS_03        0.7552     2.128   0.1288     0.162  4.6721
wruaco[notmissing]FIN-EAS_24        0.3301     1.391   0.1139     0.144  2.2861
wruaco[notmissing]FIN-WES_03        0.2554     1.291   0.1419     0.176  1.4482
wruaco[notmissing]FIN-WES_24        0.1657     1.180   0.1269     0.164  1.0117
wruaco[notmissing]FRA-LIL_21       -0.1245     0.883   0.2207     0.295 -0.4214
wruaco[notmissing]FRA-STR_21        0.0242     1.024   0.1953     0.251  0.0964
wruaco[notmissing]FRA-TOU_21        0.0532     1.055   0.1985     0.260  0.2044
wruaco[notmissing]SWE-NSW_02        0.4736     1.606   0.2052     0.255  1.8601
wruaco[notmissing]SWE-NSW_03       -0.1169     0.890   0.2942     0.341 -0.3429
wruaco[notmissing]UNK-BEL_21        0.5439     1.723   0.1440     0.186  2.9231
                                         p
allele[notmissing]                 7.6e-01
wz[notmissing, selectedcovariates] 7.1e-07
wruaco[notmissing]FIN-EAS_03       3.0e-06
wruaco[notmissing]FIN-EAS_24       2.2e-02
wruaco[notmissing]FIN-WES_03       1.5e-01
wruaco[notmissing]FIN-WES_24       3.1e-01
wruaco[notmissing]FRA-LIL_21       6.7e-01
wruaco[notmissing]FRA-STR_21       9.2e-01
wruaco[notmissing]FRA-TOU_21       8.4e-01
wruaco[notmissing]SWE-NSW_02       6.3e-02
wruaco[notmissing]SWE-NSW_03       7.3e-01
wruaco[notmissing]UNK-BEL_21       3.5e-03

                                   exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing]                     0.979      1.021     0.859      1.12
wz[notmissing, selectedcovariates]     1.650      0.606     1.353      2.01
wruaco[notmissing]FIN-EAS_03           2.128      0.470     1.550      2.92
wruaco[notmissing]FIN-EAS_24           1.391      0.719     1.048      1.85
wruaco[notmissing]FIN-WES_03           1.291      0.775     0.914      1.82
wruaco[notmissing]FIN-WES_24           1.180      0.847     0.856      1.63
wruaco[notmissing]FRA-LIL_21           0.883      1.133     0.495      1.58
wruaco[notmissing]FRA-STR_21           1.024      0.976     0.627      1.68
wruaco[notmissing]FRA-TOU_21           1.055      0.948     0.633      1.76
wruaco[notmissing]SWE-NSW_02           1.606      0.623     0.975      2.64
wruaco[notmissing]SWE-NSW_03           0.890      1.124     0.456      1.74
wruaco[notmissing]UNK-BEL_21           1.723      0.580     1.196      2.48

Rsquare= 0.027   (max possible= 0.995 )
Likelihood ratio test= 84  on 12 df,   p=7.04e-13
Wald test            = 49.7  on 12 df,   p=1.60e-06
Score (logrank) test = 86.2  on 12 df,   p=2.68e-13,   Robust = 46.4  p=5.87e-06

  (Note: the likelihood ratio and score tests assume independence of
     observations within a cluster, the Wald and robust score tests do not).

Updated on 2008-06-04