response: (chd1 %in% c('1','2'))
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: 10Q11_21_MG_458
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] * wrua3[notmissing] +
wz[notmissing, selectedcovariates] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=3003 (51 observations deleted due to missingness)
coef exp(coef) se(coef)
allele[notmissing] 0.0378 1.039 0.09691
wrua3[notmissing]FINRISK 0.2596 1.296 0.13161
wrua3[notmissing]Northern Sweden 0.3698 1.447 0.28148
wrua3[notmissing]PRIME / Belfast 0.6010 1.824 0.22275
wrua3[notmissing]PRIME / France 0.3240 1.383 0.19894
wz[notmissing, selectedcovariates]1 0.1951 1.215 0.02453
wz[notmissing, selectedcovariates]2 -0.8634 0.422 0.11365
wz[notmissing, selectedcovariates]3 0.0139 1.014 0.00800
wz[notmissing, selectedcovariates]4 0.0135 1.014 0.00229
wz[notmissing, selectedcovariates]5 0.5380 1.713 0.07727
wz[notmissing, selectedcovariates]6 0.7231 2.061 0.10298
allele[notmissing]:wrua3[notmissing]FINRISK 0.1213 1.129 0.13813
allele[notmissing]:wrua3[notmissing]Northern Sweden -0.2507 0.778 0.31412
allele[notmissing]:wrua3[notmissing]PRIME / Belfast -0.0384 0.962 0.23234
allele[notmissing]:wrua3[notmissing]PRIME / France -0.2871 0.750 0.21146
robust se z p
allele[notmissing] 0.12190 0.310 7.6e-01
wrua3[notmissing]FINRISK 0.16896 1.536 1.2e-01
wrua3[notmissing]Northern Sweden 0.38255 0.967 3.3e-01
wrua3[notmissing]PRIME / Belfast 0.30581 1.965 4.9e-02
wrua3[notmissing]PRIME / France 0.25766 1.258 2.1e-01
wz[notmissing, selectedcovariates]1 0.04790 4.073 4.6e-05
wz[notmissing, selectedcovariates]2 0.14810 -5.830 5.5e-09
wz[notmissing, selectedcovariates]3 0.01020 1.366 1.7e-01
wz[notmissing, selectedcovariates]4 0.00309 4.385 1.2e-05
wz[notmissing, selectedcovariates]5 0.11037 4.875 1.1e-06
wz[notmissing, selectedcovariates]6 0.15420 4.689 2.7e-06
allele[notmissing]:wrua3[notmissing]FINRISK 0.17716 0.685 4.9e-01
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.43928 -0.571 5.7e-01
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.31320 -0.122 9.0e-01
allele[notmissing]:wrua3[notmissing]PRIME / France 0.27698 -1.037 3.0e-01
exp(coef) exp(-coef)
allele[notmissing] 1.039 0.963
wrua3[notmissing]FINRISK 1.296 0.771
wrua3[notmissing]Northern Sweden 1.447 0.691
wrua3[notmissing]PRIME / Belfast 1.824 0.548
wrua3[notmissing]PRIME / France 1.383 0.723
wz[notmissing, selectedcovariates]1 1.215 0.823
wz[notmissing, selectedcovariates]2 0.422 2.371
wz[notmissing, selectedcovariates]3 1.014 0.986
wz[notmissing, selectedcovariates]4 1.014 0.987
wz[notmissing, selectedcovariates]5 1.713 0.584
wz[notmissing, selectedcovariates]6 2.061 0.485
allele[notmissing]:wrua3[notmissing]FINRISK 1.129 0.886
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.778 1.285
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.962 1.039
allele[notmissing]:wrua3[notmissing]PRIME / France 0.750 1.333
lower .95 upper .95
allele[notmissing] 0.818 1.319
wrua3[notmissing]FINRISK 0.931 1.805
wrua3[notmissing]Northern Sweden 0.684 3.064
wrua3[notmissing]PRIME / Belfast 1.002 3.321
wrua3[notmissing]PRIME / France 0.834 2.291
wz[notmissing, selectedcovariates]1 1.107 1.335
wz[notmissing, selectedcovariates]2 0.315 0.564
wz[notmissing, selectedcovariates]3 0.994 1.034
wz[notmissing, selectedcovariates]4 1.008 1.020
wz[notmissing, selectedcovariates]5 1.380 2.126
wz[notmissing, selectedcovariates]6 1.523 2.788
allele[notmissing]:wrua3[notmissing]FINRISK 0.798 1.598
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.329 1.841
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.521 1.778
allele[notmissing]:wrua3[notmissing]PRIME / France 0.436 1.291
Rsquare= 0.103 (max possible= 0.995 )
Likelihood ratio test= 328 on 15 df, p=0
Wald test = 145 on 15 df, p=0
Score (logrank) test = 351 on 15 df, p=0, Robust = 178 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04