response: (chd1 %in% c('1','2'))
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: 19Q12_MG_446
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] * wrua3[notmissing] +
wz[notmissing, selectedcovariates] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=2995 (52 observations deleted due to missingness)
coef exp(coef) se(coef)
allele[notmissing] 0.1550 1.168 0.10126
wrua3[notmissing]FINRISK 0.1632 1.177 0.13700
wrua3[notmissing]Northern Sweden 0.5475 1.729 0.23303
wrua3[notmissing]PRIME / Belfast 0.3815 1.464 0.20815
wrua3[notmissing]PRIME / France -0.0243 0.976 0.19845
wz[notmissing, selectedcovariates]1 0.1966 1.217 0.02452
wz[notmissing, selectedcovariates]2 -0.8687 0.419 0.11436
wz[notmissing, selectedcovariates]3 0.0144 1.015 0.00797
wz[notmissing, selectedcovariates]4 0.0127 1.013 0.00230
wz[notmissing, selectedcovariates]5 0.5422 1.720 0.07715
wz[notmissing, selectedcovariates]6 0.8115 2.251 0.10198
allele[notmissing]:wrua3[notmissing]FINRISK -0.2440 0.783 0.14190
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.6525 1.920 0.27387
allele[notmissing]:wrua3[notmissing]PRIME / Belfast -0.2924 0.746 0.21849
allele[notmissing]:wrua3[notmissing]PRIME / France -0.1347 0.874 0.20155
robust se z p
allele[notmissing] 0.12421 1.248 2.1e-01
wrua3[notmissing]FINRISK 0.17587 0.928 3.5e-01
wrua3[notmissing]Northern Sweden 0.31708 1.727 8.4e-02
wrua3[notmissing]PRIME / Belfast 0.27978 1.364 1.7e-01
wrua3[notmissing]PRIME / France 0.28617 -0.085 9.3e-01
wz[notmissing, selectedcovariates]1 0.04728 4.157 3.2e-05
wz[notmissing, selectedcovariates]2 0.15044 -5.775 7.7e-09
wz[notmissing, selectedcovariates]3 0.01029 1.402 1.6e-01
wz[notmissing, selectedcovariates]4 0.00312 4.078 4.5e-05
wz[notmissing, selectedcovariates]5 0.11020 4.921 8.6e-07
wz[notmissing, selectedcovariates]6 0.15589 5.205 1.9e-07
allele[notmissing]:wrua3[notmissing]FINRISK 0.18122 -1.346 1.8e-01
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.39039 1.671 9.5e-02
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.29711 -0.984 3.3e-01
allele[notmissing]:wrua3[notmissing]PRIME / France 0.29020 -0.464 6.4e-01
exp(coef) exp(-coef)
allele[notmissing] 1.168 0.856
wrua3[notmissing]FINRISK 1.177 0.849
wrua3[notmissing]Northern Sweden 1.729 0.578
wrua3[notmissing]PRIME / Belfast 1.464 0.683
wrua3[notmissing]PRIME / France 0.976 1.025
wz[notmissing, selectedcovariates]1 1.217 0.822
wz[notmissing, selectedcovariates]2 0.419 2.384
wz[notmissing, selectedcovariates]3 1.015 0.986
wz[notmissing, selectedcovariates]4 1.013 0.987
wz[notmissing, selectedcovariates]5 1.720 0.581
wz[notmissing, selectedcovariates]6 2.251 0.444
allele[notmissing]:wrua3[notmissing]FINRISK 0.783 1.276
allele[notmissing]:wrua3[notmissing]Northern Sweden 1.920 0.521
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.746 1.340
allele[notmissing]:wrua3[notmissing]PRIME / France 0.874 1.144
lower .95 upper .95
allele[notmissing] 0.915 1.490
wrua3[notmissing]FINRISK 0.834 1.662
wrua3[notmissing]Northern Sweden 0.929 3.219
wrua3[notmissing]PRIME / Belfast 0.846 2.534
wrua3[notmissing]PRIME / France 0.557 1.710
wz[notmissing, selectedcovariates]1 1.109 1.335
wz[notmissing, selectedcovariates]2 0.312 0.563
wz[notmissing, selectedcovariates]3 0.994 1.035
wz[notmissing, selectedcovariates]4 1.007 1.019
wz[notmissing, selectedcovariates]5 1.386 2.134
wz[notmissing, selectedcovariates]6 1.659 3.056
allele[notmissing]:wrua3[notmissing]FINRISK 0.549 1.118
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.893 4.127
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.417 1.336
allele[notmissing]:wrua3[notmissing]PRIME / France 0.495 1.544
Rsquare= 0.109 (max possible= 0.995 )
Likelihood ratio test= 347 on 15 df, p=0
Wald test = 154 on 15 df, p=0
Score (logrank) test = 375 on 15 df, p=0, Robust = 183 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04