response: (chd1 %in% c('1','2'))
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: CELSR2_MG_438
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] * wrua3[notmissing] +
wz[notmissing, selectedcovariates] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=3030 (53 observations deleted due to missingness)
coef exp(coef) se(coef)
allele[notmissing] -0.0368 0.964 0.08961
wrua3[notmissing]FINRISK 0.2687 1.308 0.12322
wrua3[notmissing]Northern Sweden 0.3640 1.439 0.22084
wrua3[notmissing]PRIME / Belfast 0.6912 1.996 0.17534
wrua3[notmissing]PRIME / France 0.1545 1.167 0.19651
wz[notmissing, selectedcovariates]1 0.1998 1.221 0.02462
wz[notmissing, selectedcovariates]2 -0.8763 0.416 0.11420
wz[notmissing, selectedcovariates]3 0.0131 1.013 0.00796
wz[notmissing, selectedcovariates]4 0.0129 1.013 0.00227
wz[notmissing, selectedcovariates]5 0.5227 1.687 0.07707
wz[notmissing, selectedcovariates]6 0.7819 2.186 0.10162
allele[notmissing]:wrua3[notmissing]FINRISK 0.1104 1.117 0.12885
allele[notmissing]:wrua3[notmissing]Northern Sweden -0.4227 0.655 0.24577
allele[notmissing]:wrua3[notmissing]PRIME / Belfast -0.1893 0.828 0.19004
allele[notmissing]:wrua3[notmissing]PRIME / France -0.0919 0.912 0.21054
robust se z p
allele[notmissing] 0.11150 -0.330 7.4e-01
wrua3[notmissing]FINRISK 0.16123 1.666 9.6e-02
wrua3[notmissing]Northern Sweden 0.28942 1.258 2.1e-01
wrua3[notmissing]PRIME / Belfast 0.23959 2.885 3.9e-03
wrua3[notmissing]PRIME / France 0.26391 0.585 5.6e-01
wz[notmissing, selectedcovariates]1 0.04724 4.229 2.3e-05
wz[notmissing, selectedcovariates]2 0.14955 -5.860 4.6e-09
wz[notmissing, selectedcovariates]3 0.01022 1.283 2.0e-01
wz[notmissing, selectedcovariates]4 0.00307 4.191 2.8e-05
wz[notmissing, selectedcovariates]5 0.10998 4.752 2.0e-06
wz[notmissing, selectedcovariates]6 0.15426 5.068 4.0e-07
allele[notmissing]:wrua3[notmissing]FINRISK 0.16440 0.671 5.0e-01
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.31434 -1.345 1.8e-01
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.25757 -0.735 4.6e-01
allele[notmissing]:wrua3[notmissing]PRIME / France 0.28596 -0.321 7.5e-01
exp(coef) exp(-coef)
allele[notmissing] 0.964 1.037
wrua3[notmissing]FINRISK 1.308 0.764
wrua3[notmissing]Northern Sweden 1.439 0.695
wrua3[notmissing]PRIME / Belfast 1.996 0.501
wrua3[notmissing]PRIME / France 1.167 0.857
wz[notmissing, selectedcovariates]1 1.221 0.819
wz[notmissing, selectedcovariates]2 0.416 2.402
wz[notmissing, selectedcovariates]3 1.013 0.987
wz[notmissing, selectedcovariates]4 1.013 0.987
wz[notmissing, selectedcovariates]5 1.687 0.593
wz[notmissing, selectedcovariates]6 2.186 0.458
allele[notmissing]:wrua3[notmissing]FINRISK 1.117 0.895
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.655 1.526
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.828 1.208
allele[notmissing]:wrua3[notmissing]PRIME / France 0.912 1.096
lower .95 upper .95
allele[notmissing] 0.775 1.199
wrua3[notmissing]FINRISK 0.954 1.794
wrua3[notmissing]Northern Sweden 0.816 2.538
wrua3[notmissing]PRIME / Belfast 1.248 3.193
wrua3[notmissing]PRIME / France 0.696 1.958
wz[notmissing, selectedcovariates]1 1.113 1.340
wz[notmissing, selectedcovariates]2 0.311 0.558
wz[notmissing, selectedcovariates]3 0.993 1.034
wz[notmissing, selectedcovariates]4 1.007 1.019
wz[notmissing, selectedcovariates]5 1.360 2.092
wz[notmissing, selectedcovariates]6 1.615 2.957
allele[notmissing]:wrua3[notmissing]FINRISK 0.809 1.541
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.354 1.213
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.499 1.371
allele[notmissing]:wrua3[notmissing]PRIME / France 0.521 1.598
Rsquare= 0.107 (max possible= 0.995 )
Likelihood ratio test= 344 on 15 df, p=0
Wald test = 152 on 15 df, p=0
Score (logrank) test = 372 on 15 df, p=0, Robust = 185 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04