response: (chd1 %in% c('1','2'))
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: MIA3_MG_454
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] * wrua3[notmissing] +
wz[notmissing, selectedcovariates] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=3010 (51 observations deleted due to missingness)
coef exp(coef) se(coef)
allele[notmissing] -0.2173 0.805 0.10109
wrua3[notmissing]FINRISK 0.3002 1.350 0.14780
wrua3[notmissing]Northern Sweden 0.3136 1.368 0.31436
wrua3[notmissing]PRIME / Belfast 1.3136 3.720 0.22649
wrua3[notmissing]PRIME / France -0.0716 0.931 0.25798
wz[notmissing, selectedcovariates]1 0.1961 1.217 0.02437
wz[notmissing, selectedcovariates]2 -0.8645 0.421 0.11380
wz[notmissing, selectedcovariates]3 0.0128 1.013 0.00794
wz[notmissing, selectedcovariates]4 0.0138 1.014 0.00230
wz[notmissing, selectedcovariates]5 0.5377 1.712 0.07702
wz[notmissing, selectedcovariates]6 0.7661 2.151 0.10147
allele[notmissing]:wrua3[notmissing]FINRISK -0.0466 0.954 0.15000
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.2267 1.254 0.33781
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.9848 2.677 0.24837
allele[notmissing]:wrua3[notmissing]PRIME / France -0.2455 0.782 0.27132
robust se z p
allele[notmissing] 0.12065 -1.801 7.2e-02
wrua3[notmissing]FINRISK 0.18994 1.580 1.1e-01
wrua3[notmissing]Northern Sweden 0.38257 0.820 4.1e-01
wrua3[notmissing]PRIME / Belfast 0.34898 3.764 1.7e-04
wrua3[notmissing]PRIME / France 0.34588 -0.207 8.4e-01
wz[notmissing, selectedcovariates]1 0.04831 4.059 4.9e-05
wz[notmissing, selectedcovariates]2 0.14931 -5.790 7.0e-09
wz[notmissing, selectedcovariates]3 0.01021 1.256 2.1e-01
wz[notmissing, selectedcovariates]4 0.00313 4.426 9.6e-06
wz[notmissing, selectedcovariates]5 0.11103 4.843 1.3e-06
wz[notmissing, selectedcovariates]6 0.15530 4.933 8.1e-07
allele[notmissing]:wrua3[notmissing]FINRISK 0.18827 -0.248 8.0e-01
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.40044 0.566 5.7e-01
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.38352 2.568 1.0e-02
allele[notmissing]:wrua3[notmissing]PRIME / France 0.36840 -0.666 5.1e-01
exp(coef) exp(-coef)
allele[notmissing] 0.805 1.243
wrua3[notmissing]FINRISK 1.350 0.741
wrua3[notmissing]Northern Sweden 1.368 0.731
wrua3[notmissing]PRIME / Belfast 3.720 0.269
wrua3[notmissing]PRIME / France 0.931 1.074
wz[notmissing, selectedcovariates]1 1.217 0.822
wz[notmissing, selectedcovariates]2 0.421 2.374
wz[notmissing, selectedcovariates]3 1.013 0.987
wz[notmissing, selectedcovariates]4 1.014 0.986
wz[notmissing, selectedcovariates]5 1.712 0.584
wz[notmissing, selectedcovariates]6 2.151 0.465
allele[notmissing]:wrua3[notmissing]FINRISK 0.954 1.048
allele[notmissing]:wrua3[notmissing]Northern Sweden 1.254 0.797
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 2.677 0.374
allele[notmissing]:wrua3[notmissing]PRIME / France 0.782 1.278
lower .95 upper .95
allele[notmissing] 0.635 1.019
wrua3[notmissing]FINRISK 0.930 1.959
wrua3[notmissing]Northern Sweden 0.646 2.896
wrua3[notmissing]PRIME / Belfast 1.877 7.371
wrua3[notmissing]PRIME / France 0.473 1.834
wz[notmissing, selectedcovariates]1 1.107 1.337
wz[notmissing, selectedcovariates]2 0.314 0.564
wz[notmissing, selectedcovariates]3 0.993 1.033
wz[notmissing, selectedcovariates]4 1.008 1.020
wz[notmissing, selectedcovariates]5 1.377 2.128
wz[notmissing, selectedcovariates]6 1.587 2.917
allele[notmissing]:wrua3[notmissing]FINRISK 0.660 1.380
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.572 2.750
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 1.263 5.677
allele[notmissing]:wrua3[notmissing]PRIME / France 0.380 1.611
Rsquare= 0.113 (max possible= 0.995 )
Likelihood ratio test= 359 on 15 df, p=0
Wald test = 153 on 15 df, p=0
Score (logrank) test = 390 on 15 df, p=0, Robust = 188 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04