response: (chd1 %in% c('1','2'))
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: MTHFD1L_MG_449
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] * wrua3[notmissing] +
wz[notmissing, selectedcovariates] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=3027 (51 observations deleted due to missingness)
coef exp(coef) se(coef)
allele[notmissing] -0.1771 0.838 0.25560
wrua3[notmissing]FINRISK 0.3988 1.490 0.34182
wrua3[notmissing]Northern Sweden 1.2349 3.438 0.57795
wrua3[notmissing]PRIME / Belfast 0.6878 1.989 0.48453
wrua3[notmissing]PRIME / France 0.5651 1.760 0.49189
wz[notmissing, selectedcovariates]1 0.1986 1.220 0.02446
wz[notmissing, selectedcovariates]2 -0.8634 0.422 0.11355
wz[notmissing, selectedcovariates]3 0.0131 1.013 0.00797
wz[notmissing, selectedcovariates]4 0.0140 1.014 0.00228
wz[notmissing, selectedcovariates]5 0.5381 1.713 0.07698
wz[notmissing, selectedcovariates]6 0.7605 2.139 0.10126
allele[notmissing]:wrua3[notmissing]FINRISK 0.0483 1.049 0.34536
allele[notmissing]:wrua3[notmissing]Northern Sweden 1.1337 3.107 0.59243
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.1109 1.117 0.49492
allele[notmissing]:wrua3[notmissing]PRIME / France 0.4583 1.581 0.49751
robust se z p
allele[notmissing] 0.32395 -0.547 5.8e-01
wrua3[notmissing]FINRISK 0.43667 0.913 3.6e-01
wrua3[notmissing]Northern Sweden 0.82808 1.491 1.4e-01
wrua3[notmissing]PRIME / Belfast 0.65610 1.048 2.9e-01
wrua3[notmissing]PRIME / France 0.75302 0.750 4.5e-01
wz[notmissing, selectedcovariates]1 0.04777 4.157 3.2e-05
wz[notmissing, selectedcovariates]2 0.14919 -5.787 7.2e-09
wz[notmissing, selectedcovariates]3 0.01030 1.269 2.0e-01
wz[notmissing, selectedcovariates]4 0.00309 4.529 5.9e-06
wz[notmissing, selectedcovariates]5 0.11006 4.890 1.0e-06
wz[notmissing, selectedcovariates]6 0.15417 4.933 8.1e-07
allele[notmissing]:wrua3[notmissing]FINRISK 0.44054 0.110 9.1e-01
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.84300 1.345 1.8e-01
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.67173 0.165 8.7e-01
allele[notmissing]:wrua3[notmissing]PRIME / France 0.76171 0.602 5.5e-01
exp(coef) exp(-coef)
allele[notmissing] 0.838 1.194
wrua3[notmissing]FINRISK 1.490 0.671
wrua3[notmissing]Northern Sweden 3.438 0.291
wrua3[notmissing]PRIME / Belfast 1.989 0.503
wrua3[notmissing]PRIME / France 1.760 0.568
wz[notmissing, selectedcovariates]1 1.220 0.820
wz[notmissing, selectedcovariates]2 0.422 2.371
wz[notmissing, selectedcovariates]3 1.013 0.987
wz[notmissing, selectedcovariates]4 1.014 0.986
wz[notmissing, selectedcovariates]5 1.713 0.584
wz[notmissing, selectedcovariates]6 2.139 0.467
allele[notmissing]:wrua3[notmissing]FINRISK 1.049 0.953
allele[notmissing]:wrua3[notmissing]Northern Sweden 3.107 0.322
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 1.117 0.895
allele[notmissing]:wrua3[notmissing]PRIME / France 1.581 0.632
lower .95 upper .95
allele[notmissing] 0.444 1.581
wrua3[notmissing]FINRISK 0.633 3.507
wrua3[notmissing]Northern Sweden 0.678 17.426
wrua3[notmissing]PRIME / Belfast 0.550 7.198
wrua3[notmissing]PRIME / France 0.402 7.699
wz[notmissing, selectedcovariates]1 1.111 1.339
wz[notmissing, selectedcovariates]2 0.315 0.565
wz[notmissing, selectedcovariates]3 0.993 1.034
wz[notmissing, selectedcovariates]4 1.008 1.020
wz[notmissing, selectedcovariates]5 1.380 2.125
wz[notmissing, selectedcovariates]6 1.581 2.894
allele[notmissing]:wrua3[notmissing]FINRISK 0.443 2.489
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.595 16.215
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.299 4.168
allele[notmissing]:wrua3[notmissing]PRIME / France 0.355 7.037
Rsquare= 0.106 (max possible= 0.995 )
Likelihood ratio test= 339 on 15 df, p=0
Wald test = 148 on 15 df, p=0
Score (logrank) test = 367 on 15 df, p=0, Robust = 183 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04