response: (chd1 %in% c('1','2'))
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: SMAD3_MG_452
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] * wrua3[notmissing] +
wz[notmissing, selectedcovariates] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=3025 (51 observations deleted due to missingness)
coef exp(coef) se(coef)
allele[notmissing] -0.1636 0.849 0.09214
wrua3[notmissing]FINRISK 0.4944 1.639 0.12060
wrua3[notmissing]Northern Sweden 0.3101 1.364 0.20378
wrua3[notmissing]PRIME / Belfast 0.7139 2.042 0.16182
wrua3[notmissing]PRIME / France 0.0761 1.079 0.18312
wz[notmissing, selectedcovariates]1 0.2014 1.223 0.02469
wz[notmissing, selectedcovariates]2 -0.8604 0.423 0.11345
wz[notmissing, selectedcovariates]3 0.0134 1.014 0.00796
wz[notmissing, selectedcovariates]4 0.0143 1.014 0.00229
wz[notmissing, selectedcovariates]5 0.5431 1.721 0.07691
wz[notmissing, selectedcovariates]6 0.7765 2.174 0.10138
allele[notmissing]:wrua3[notmissing]FINRISK 0.2413 1.273 0.12664
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.3070 1.359 0.23919
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.3138 1.369 0.18167
allele[notmissing]:wrua3[notmissing]PRIME / France -0.1636 0.849 0.21028
robust se z p
allele[notmissing] 0.11730 -1.395 1.6e-01
wrua3[notmissing]FINRISK 0.16138 3.063 2.2e-03
wrua3[notmissing]Northern Sweden 0.26097 1.188 2.3e-01
wrua3[notmissing]PRIME / Belfast 0.21987 3.247 1.2e-03
wrua3[notmissing]PRIME / France 0.26471 0.287 7.7e-01
wz[notmissing, selectedcovariates]1 0.04794 4.201 2.7e-05
wz[notmissing, selectedcovariates]2 0.14790 -5.818 6.0e-09
wz[notmissing, selectedcovariates]3 0.01022 1.315 1.9e-01
wz[notmissing, selectedcovariates]4 0.00309 4.613 4.0e-06
wz[notmissing, selectedcovariates]5 0.10948 4.961 7.0e-07
wz[notmissing, selectedcovariates]6 0.15376 5.050 4.4e-07
allele[notmissing]:wrua3[notmissing]FINRISK 0.16339 1.477 1.4e-01
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.29851 1.028 3.0e-01
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.24963 1.257 2.1e-01
allele[notmissing]:wrua3[notmissing]PRIME / France 0.29562 -0.554 5.8e-01
exp(coef) exp(-coef)
allele[notmissing] 0.849 1.178
wrua3[notmissing]FINRISK 1.639 0.610
wrua3[notmissing]Northern Sweden 1.364 0.733
wrua3[notmissing]PRIME / Belfast 2.042 0.490
wrua3[notmissing]PRIME / France 1.079 0.927
wz[notmissing, selectedcovariates]1 1.223 0.818
wz[notmissing, selectedcovariates]2 0.423 2.364
wz[notmissing, selectedcovariates]3 1.014 0.987
wz[notmissing, selectedcovariates]4 1.014 0.986
wz[notmissing, selectedcovariates]5 1.721 0.581
wz[notmissing, selectedcovariates]6 2.174 0.460
allele[notmissing]:wrua3[notmissing]FINRISK 1.273 0.786
allele[notmissing]:wrua3[notmissing]Northern Sweden 1.359 0.736
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 1.369 0.731
allele[notmissing]:wrua3[notmissing]PRIME / France 0.849 1.178
lower .95 upper .95
allele[notmissing] 0.675 1.069
wrua3[notmissing]FINRISK 1.195 2.249
wrua3[notmissing]Northern Sweden 0.818 2.274
wrua3[notmissing]PRIME / Belfast 1.327 3.142
wrua3[notmissing]PRIME / France 0.642 1.813
wz[notmissing, selectedcovariates]1 1.113 1.344
wz[notmissing, selectedcovariates]2 0.317 0.565
wz[notmissing, selectedcovariates]3 0.993 1.034
wz[notmissing, selectedcovariates]4 1.008 1.021
wz[notmissing, selectedcovariates]5 1.389 2.133
wz[notmissing, selectedcovariates]6 1.608 2.938
allele[notmissing]:wrua3[notmissing]FINRISK 0.924 1.753
allele[notmissing]:wrua3[notmissing]Northern Sweden 0.757 2.440
allele[notmissing]:wrua3[notmissing]PRIME / Belfast 0.839 2.232
allele[notmissing]:wrua3[notmissing]PRIME / France 0.476 1.516
Rsquare= 0.107 (max possible= 0.995 )
Likelihood ratio test= 343 on 15 df, p=0
Wald test = 152 on 15 df, p=0
Score (logrank) test = 369 on 15 df, p=0, Robust = 182 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04