response: (death=='1')
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: 10Q11_21_MG_458
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing,
selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=3413 (65 observations deleted due to missingness)
coef exp(coef) se(coef) robust se
allele[notmissing] -0.00604 0.9940 0.05128 0.06817
wz[notmissing, selectedcovariates]1 -0.04609 0.9550 0.02556 0.03372
wz[notmissing, selectedcovariates]2 -0.21994 0.8026 0.09001 0.12184
wz[notmissing, selectedcovariates]3 -0.01361 0.9865 0.00710 0.00966
wz[notmissing, selectedcovariates]4 0.00947 1.0095 0.00203 0.00273
wz[notmissing, selectedcovariates]5 0.58745 1.7994 0.06881 0.09458
wz[notmissing, selectedcovariates]6 0.54979 1.7329 0.09734 0.14389
wruaco[notmissing]FIN-EAS_03 0.02749 1.0279 0.12677 0.16576
wruaco[notmissing]FIN-EAS_24 -0.32791 0.7204 0.10736 0.14245
wruaco[notmissing]FIN-WES_03 -0.01920 0.9810 0.12177 0.15730
wruaco[notmissing]FIN-WES_24 -0.30131 0.7398 0.11216 0.15630
wruaco[notmissing]FRA-LIL_21 -2.83484 0.0587 0.71181 0.74575
wruaco[notmissing]FRA-STR_21 -0.34864 0.7056 0.20597 0.26711
wruaco[notmissing]FRA-TOU_21 -0.53382 0.5864 0.25449 0.30366
wruaco[notmissing]SWE-NSW_02 -0.19152 0.8257 0.17261 0.22949
wruaco[notmissing]SWE-NSW_03 -0.58581 0.5567 0.18418 0.22902
wruaco[notmissing]UNK-BEL_21 -0.33291 0.7168 0.17824 0.22006
z p
allele[notmissing] -0.0886 9.3e-01
wz[notmissing, selectedcovariates]1 -1.3668 1.7e-01
wz[notmissing, selectedcovariates]2 -1.8051 7.1e-02
wz[notmissing, selectedcovariates]3 -1.4097 1.6e-01
wz[notmissing, selectedcovariates]4 3.4668 5.3e-04
wz[notmissing, selectedcovariates]5 6.2113 5.3e-10
wz[notmissing, selectedcovariates]6 3.8209 1.3e-04
wruaco[notmissing]FIN-EAS_03 0.1659 8.7e-01
wruaco[notmissing]FIN-EAS_24 -2.3019 2.1e-02
wruaco[notmissing]FIN-WES_03 -0.1221 9.0e-01
wruaco[notmissing]FIN-WES_24 -1.9278 5.4e-02
wruaco[notmissing]FRA-LIL_21 -3.8013 1.4e-04
wruaco[notmissing]FRA-STR_21 -1.3052 1.9e-01
wruaco[notmissing]FRA-TOU_21 -1.7580 7.9e-02
wruaco[notmissing]SWE-NSW_02 -0.8345 4.0e-01
wruaco[notmissing]SWE-NSW_03 -2.5579 1.1e-02
wruaco[notmissing]UNK-BEL_21 -1.5128 1.3e-01
exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing] 0.9940 1.006 0.8697 1.136
wz[notmissing, selectedcovariates]1 0.9550 1.047 0.8939 1.020
wz[notmissing, selectedcovariates]2 0.8026 1.246 0.6321 1.019
wz[notmissing, selectedcovariates]3 0.9865 1.014 0.9680 1.005
wz[notmissing, selectedcovariates]4 1.0095 0.991 1.0041 1.015
wz[notmissing, selectedcovariates]5 1.7994 0.556 1.4949 2.166
wz[notmissing, selectedcovariates]6 1.7329 0.577 1.3070 2.297
wruaco[notmissing]FIN-EAS_03 1.0279 0.973 0.7427 1.422
wruaco[notmissing]FIN-EAS_24 0.7204 1.388 0.5449 0.952
wruaco[notmissing]FIN-WES_03 0.9810 1.019 0.7207 1.335
wruaco[notmissing]FIN-WES_24 0.7398 1.352 0.5446 1.005
wruaco[notmissing]FRA-LIL_21 0.0587 17.028 0.0136 0.253
wruaco[notmissing]FRA-STR_21 0.7056 1.417 0.4180 1.191
wruaco[notmissing]FRA-TOU_21 0.5864 1.705 0.3234 1.063
wruaco[notmissing]SWE-NSW_02 0.8257 1.211 0.5266 1.295
wruaco[notmissing]SWE-NSW_03 0.5567 1.796 0.3553 0.872
wruaco[notmissing]UNK-BEL_21 0.7168 1.395 0.4657 1.103
Rsquare= 0.075 (max possible= 0.998 )
Likelihood ratio test= 266 on 17 df, p=0
Wald test = 137 on 17 df, p=0
Score (logrank) test = 248 on 17 df, p=0, Robust = 144 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04