response: (death=='1')
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: 19Q12_MG_446
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing,
selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=3403 (65 observations deleted due to missingness)
coef exp(coef) se(coef) robust se
allele[notmissing] 0.14363 1.1545 0.05157 0.06970
wz[notmissing, selectedcovariates]1 -0.04885 0.9523 0.02569 0.03422
wz[notmissing, selectedcovariates]2 -0.20259 0.8166 0.09030 0.12257
wz[notmissing, selectedcovariates]3 -0.01404 0.9861 0.00713 0.00971
wz[notmissing, selectedcovariates]4 0.00909 1.0091 0.00203 0.00274
wz[notmissing, selectedcovariates]5 0.56941 1.7672 0.06874 0.09503
wz[notmissing, selectedcovariates]6 0.58038 1.7867 0.09669 0.14395
wruaco[notmissing]FIN-EAS_03 -0.00649 0.9935 0.12690 0.16673
wruaco[notmissing]FIN-EAS_24 -0.34019 0.7116 0.10759 0.14360
wruaco[notmissing]FIN-WES_03 -0.05291 0.9485 0.12122 0.15785
wruaco[notmissing]FIN-WES_24 -0.34207 0.7103 0.11222 0.15652
wruaco[notmissing]FRA-LIL_21 -3.54175 0.0290 1.00337 1.03048
wruaco[notmissing]FRA-STR_21 -0.30778 0.7351 0.19563 0.25953
wruaco[notmissing]FRA-TOU_21 -0.55295 0.5752 0.24915 0.29789
wruaco[notmissing]SWE-NSW_02 -0.25696 0.7734 0.17232 0.22986
wruaco[notmissing]SWE-NSW_03 -0.64898 0.5226 0.18207 0.22710
wruaco[notmissing]UNK-BEL_21 -0.39999 0.6703 0.18001 0.22063
z p
allele[notmissing] 2.0608 3.9e-02
wz[notmissing, selectedcovariates]1 -1.4278 1.5e-01
wz[notmissing, selectedcovariates]2 -1.6528 9.8e-02
wz[notmissing, selectedcovariates]3 -1.4468 1.5e-01
wz[notmissing, selectedcovariates]4 3.3219 8.9e-04
wz[notmissing, selectedcovariates]5 5.9921 2.1e-09
wz[notmissing, selectedcovariates]6 4.0317 5.5e-05
wruaco[notmissing]FIN-EAS_03 -0.0389 9.7e-01
wruaco[notmissing]FIN-EAS_24 -2.3690 1.8e-02
wruaco[notmissing]FIN-WES_03 -0.3352 7.4e-01
wruaco[notmissing]FIN-WES_24 -2.1855 2.9e-02
wruaco[notmissing]FRA-LIL_21 -3.4370 5.9e-04
wruaco[notmissing]FRA-STR_21 -1.1859 2.4e-01
wruaco[notmissing]FRA-TOU_21 -1.8562 6.3e-02
wruaco[notmissing]SWE-NSW_02 -1.1179 2.6e-01
wruaco[notmissing]SWE-NSW_03 -2.8577 4.3e-03
wruaco[notmissing]UNK-BEL_21 -1.8130 7.0e-02
exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing] 1.1545 0.866 1.00705 1.323
wz[notmissing, selectedcovariates]1 0.9523 1.050 0.89055 1.018
wz[notmissing, selectedcovariates]2 0.8166 1.225 0.64222 1.038
wz[notmissing, selectedcovariates]3 0.9861 1.014 0.96747 1.005
wz[notmissing, selectedcovariates]4 1.0091 0.991 1.00373 1.015
wz[notmissing, selectedcovariates]5 1.7672 0.566 1.46691 2.129
wz[notmissing, selectedcovariates]6 1.7867 0.560 1.34748 2.369
wruaco[notmissing]FIN-EAS_03 0.9935 1.007 0.71658 1.378
wruaco[notmissing]FIN-EAS_24 0.7116 1.405 0.53706 0.943
wruaco[notmissing]FIN-WES_03 0.9485 1.054 0.69608 1.292
wruaco[notmissing]FIN-WES_24 0.7103 1.408 0.52266 0.965
wruaco[notmissing]FRA-LIL_21 0.0290 34.527 0.00384 0.218
wruaco[notmissing]FRA-STR_21 0.7351 1.360 0.44199 1.222
wruaco[notmissing]FRA-TOU_21 0.5752 1.738 0.32084 1.031
wruaco[notmissing]SWE-NSW_02 0.7734 1.293 0.49289 1.214
wruaco[notmissing]SWE-NSW_03 0.5226 1.914 0.33485 0.816
wruaco[notmissing]UNK-BEL_21 0.6703 1.492 0.43500 1.033
Rsquare= 0.078 (max possible= 0.998 )
Likelihood ratio test= 277 on 17 df, p=0
Wald test = 137 on 17 df, p=0
Score (logrank) test = 256 on 17 df, p=0, Robust = 148 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04