response: (death=='1')
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: CELSR2_MG_438
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing,
selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=3444 (67 observations deleted due to missingness)
coef exp(coef) se(coef) robust se
allele[notmissing] 0.07376 1.0765 0.04788 0.06438
wz[notmissing, selectedcovariates]1 -0.04699 0.9541 0.02558 0.03386
wz[notmissing, selectedcovariates]2 -0.21750 0.8045 0.08969 0.12119
wz[notmissing, selectedcovariates]3 -0.01531 0.9848 0.00712 0.00969
wz[notmissing, selectedcovariates]4 0.00942 1.0095 0.00202 0.00272
wz[notmissing, selectedcovariates]5 0.57601 1.7789 0.06857 0.09469
wz[notmissing, selectedcovariates]6 0.56802 1.7648 0.09667 0.14275
wruaco[notmissing]FIN-EAS_03 0.00328 1.0033 0.12721 0.16694
wruaco[notmissing]FIN-EAS_24 -0.32328 0.7238 0.10733 0.14283
wruaco[notmissing]FIN-WES_03 -0.02117 0.9791 0.12097 0.15677
wruaco[notmissing]FIN-WES_24 -0.30793 0.7350 0.11158 0.15556
wruaco[notmissing]FRA-LIL_21 -2.84048 0.0584 0.71184 0.74634
wruaco[notmissing]FRA-STR_21 -0.31601 0.7290 0.19538 0.25600
wruaco[notmissing]FRA-TOU_21 -0.57110 0.5649 0.24925 0.29647
wruaco[notmissing]SWE-NSW_02 -0.23153 0.7933 0.17234 0.22946
wruaco[notmissing]SWE-NSW_03 -0.64483 0.5248 0.18420 0.22761
wruaco[notmissing]UNK-BEL_21 -0.30245 0.7390 0.17554 0.21742
z p
allele[notmissing] 1.1457 2.5e-01
wz[notmissing, selectedcovariates]1 -1.3876 1.7e-01
wz[notmissing, selectedcovariates]2 -1.7947 7.3e-02
wz[notmissing, selectedcovariates]3 -1.5801 1.1e-01
wz[notmissing, selectedcovariates]4 3.4659 5.3e-04
wz[notmissing, selectedcovariates]5 6.0830 1.2e-09
wz[notmissing, selectedcovariates]6 3.9791 6.9e-05
wruaco[notmissing]FIN-EAS_03 0.0197 9.8e-01
wruaco[notmissing]FIN-EAS_24 -2.2633 2.4e-02
wruaco[notmissing]FIN-WES_03 -0.1350 8.9e-01
wruaco[notmissing]FIN-WES_24 -1.9795 4.8e-02
wruaco[notmissing]FRA-LIL_21 -3.8059 1.4e-04
wruaco[notmissing]FRA-STR_21 -1.2344 2.2e-01
wruaco[notmissing]FRA-TOU_21 -1.9264 5.4e-02
wruaco[notmissing]SWE-NSW_02 -1.0090 3.1e-01
wruaco[notmissing]SWE-NSW_03 -2.8331 4.6e-03
wruaco[notmissing]UNK-BEL_21 -1.3911 1.6e-01
exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing] 1.0765 0.929 0.9489 1.221
wz[notmissing, selectedcovariates]1 0.9541 1.048 0.8928 1.020
wz[notmissing, selectedcovariates]2 0.8045 1.243 0.6344 1.020
wz[notmissing, selectedcovariates]3 0.9848 1.015 0.9663 1.004
wz[notmissing, selectedcovariates]4 1.0095 0.991 1.0041 1.015
wz[notmissing, selectedcovariates]5 1.7789 0.562 1.4776 2.142
wz[notmissing, selectedcovariates]6 1.7648 0.567 1.3341 2.335
wruaco[notmissing]FIN-EAS_03 1.0033 0.997 0.7233 1.392
wruaco[notmissing]FIN-EAS_24 0.7238 1.382 0.5470 0.958
wruaco[notmissing]FIN-WES_03 0.9791 1.021 0.7201 1.331
wruaco[notmissing]FIN-WES_24 0.7350 1.361 0.5418 0.997
wruaco[notmissing]FRA-LIL_21 0.0584 17.124 0.0135 0.252
wruaco[notmissing]FRA-STR_21 0.7290 1.372 0.4414 1.204
wruaco[notmissing]FRA-TOU_21 0.5649 1.770 0.3160 1.010
wruaco[notmissing]SWE-NSW_02 0.7933 1.261 0.5060 1.244
wruaco[notmissing]SWE-NSW_03 0.5248 1.906 0.3359 0.820
wruaco[notmissing]UNK-BEL_21 0.7390 1.353 0.4826 1.132
Rsquare= 0.075 (max possible= 0.998 )
Likelihood ratio test= 270 on 17 df, p=0
Wald test = 138 on 17 df, p=0
Score (logrank) test = 251 on 17 df, p=0, Robust = 145 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04