response: (death=='1')
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: MIA3_MG_454
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing,
selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=3423 (65 observations deleted due to missingness)
coef exp(coef) se(coef) robust se
allele[notmissing] -0.03074 0.9697 0.05287 0.06800
wz[notmissing, selectedcovariates]1 -0.04364 0.9573 0.02557 0.03379
wz[notmissing, selectedcovariates]2 -0.23124 0.7935 0.09040 0.12300
wz[notmissing, selectedcovariates]3 -0.01627 0.9839 0.00712 0.00972
wz[notmissing, selectedcovariates]4 0.00965 1.0097 0.00203 0.00274
wz[notmissing, selectedcovariates]5 0.61093 1.8421 0.06879 0.09508
wz[notmissing, selectedcovariates]6 0.57127 1.7705 0.09670 0.14289
wruaco[notmissing]FIN-EAS_03 0.02356 1.0238 0.12820 0.16856
wruaco[notmissing]FIN-EAS_24 -0.32485 0.7226 0.10749 0.14324
wruaco[notmissing]FIN-WES_03 0.01326 1.0133 0.12090 0.15669
wruaco[notmissing]FIN-WES_24 -0.28935 0.7488 0.11187 0.15587
wruaco[notmissing]FRA-LIL_21 -2.83289 0.0588 0.71177 0.74643
wruaco[notmissing]FRA-STR_21 -0.24868 0.7798 0.19786 0.26289
wruaco[notmissing]FRA-TOU_21 -0.51310 0.5986 0.24864 0.29717
wruaco[notmissing]SWE-NSW_02 -0.26048 0.7707 0.17313 0.23044
wruaco[notmissing]SWE-NSW_03 -0.65067 0.5217 0.18443 0.22951
wruaco[notmissing]UNK-BEL_21 -0.31267 0.7315 0.17667 0.21911
z p
allele[notmissing] -0.4521 6.5e-01
wz[notmissing, selectedcovariates]1 -1.2913 2.0e-01
wz[notmissing, selectedcovariates]2 -1.8800 6.0e-02
wz[notmissing, selectedcovariates]3 -1.6750 9.4e-02
wz[notmissing, selectedcovariates]4 3.5250 4.2e-04
wz[notmissing, selectedcovariates]5 6.4256 1.3e-10
wz[notmissing, selectedcovariates]6 3.9980 6.4e-05
wruaco[notmissing]FIN-EAS_03 0.1398 8.9e-01
wruaco[notmissing]FIN-EAS_24 -2.2679 2.3e-02
wruaco[notmissing]FIN-WES_03 0.0846 9.3e-01
wruaco[notmissing]FIN-WES_24 -1.8563 6.3e-02
wruaco[notmissing]FRA-LIL_21 -3.7952 1.5e-04
wruaco[notmissing]FRA-STR_21 -0.9459 3.4e-01
wruaco[notmissing]FRA-TOU_21 -1.7266 8.4e-02
wruaco[notmissing]SWE-NSW_02 -1.1304 2.6e-01
wruaco[notmissing]SWE-NSW_03 -2.8350 4.6e-03
wruaco[notmissing]UNK-BEL_21 -1.4270 1.5e-01
exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing] 0.9697 1.031 0.8487 1.108
wz[notmissing, selectedcovariates]1 0.9573 1.045 0.8959 1.023
wz[notmissing, selectedcovariates]2 0.7935 1.260 0.6236 1.010
wz[notmissing, selectedcovariates]3 0.9839 1.016 0.9653 1.003
wz[notmissing, selectedcovariates]4 1.0097 0.990 1.0043 1.015
wz[notmissing, selectedcovariates]5 1.8421 0.543 1.5290 2.219
wz[notmissing, selectedcovariates]6 1.7705 0.565 1.3380 2.343
wruaco[notmissing]FIN-EAS_03 1.0238 0.977 0.7358 1.425
wruaco[notmissing]FIN-EAS_24 0.7226 1.384 0.5458 0.957
wruaco[notmissing]FIN-WES_03 1.0133 0.987 0.7454 1.378
wruaco[notmissing]FIN-WES_24 0.7488 1.336 0.5516 1.016
wruaco[notmissing]FRA-LIL_21 0.0588 16.995 0.0136 0.254
wruaco[notmissing]FRA-STR_21 0.7798 1.282 0.4658 1.305
wruaco[notmissing]FRA-TOU_21 0.5986 1.670 0.3344 1.072
wruaco[notmissing]SWE-NSW_02 0.7707 1.298 0.4906 1.211
wruaco[notmissing]SWE-NSW_03 0.5217 1.917 0.3327 0.818
wruaco[notmissing]UNK-BEL_21 0.7315 1.367 0.4761 1.124
Rsquare= 0.079 (max possible= 0.998 )
Likelihood ratio test= 280 on 17 df, p=0
Wald test = 142 on 17 df, p=0
Score (logrank) test = 260 on 17 df, p=0, Robust = 150 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04