response: (death=='1') 
covariates: dsmoker 
SNP: 10Q11_21_MG_458 
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing, 
    selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) + 
    cluster(wdata$id[notmissing]), weights = weight[notmissing], 
    robust = TRUE)

  n= 3478 
                                      coef exp(coef) se(coef) robust se      z
allele[notmissing]                 -0.0246     0.976   0.0505    0.0668 -0.369
wz[notmissing, selectedcovariates]  0.5770     1.781   0.0670    0.0912  6.324
wruaco[notmissing]FIN-EAS_03        0.0673     1.070   0.1243    0.1614  0.417
wruaco[notmissing]FIN-EAS_24       -0.1896     0.827   0.1016    0.1351 -1.403
wruaco[notmissing]FIN-WES_03        0.0285     1.029   0.1205    0.1556  0.183
wruaco[notmissing]FIN-WES_24       -0.2351     0.791   0.1070    0.1481 -1.588
wruaco[notmissing]FRA-LIL_21       -2.4651     0.085   0.5829    0.6143 -4.013
wruaco[notmissing]FRA-STR_21       -0.3156     0.729   0.2052    0.2604 -1.212
wruaco[notmissing]FRA-TOU_21       -0.5232     0.593   0.2361    0.2837 -1.844
wruaco[notmissing]SWE-NSW_02       -0.1868     0.830   0.1675    0.2176 -0.858
wruaco[notmissing]SWE-NSW_03       -0.5622     0.570   0.1805    0.2194 -2.562
wruaco[notmissing]UNK-BEL_21       -0.3219     0.725   0.1764    0.2145 -1.501
                                         p
allele[notmissing]                 7.1e-01
wz[notmissing, selectedcovariates] 2.5e-10
wruaco[notmissing]FIN-EAS_03       6.8e-01
wruaco[notmissing]FIN-EAS_24       1.6e-01
wruaco[notmissing]FIN-WES_03       8.5e-01
wruaco[notmissing]FIN-WES_24       1.1e-01
wruaco[notmissing]FRA-LIL_21       6.0e-05
wruaco[notmissing]FRA-STR_21       2.3e-01
wruaco[notmissing]FRA-TOU_21       6.5e-02
wruaco[notmissing]SWE-NSW_02       3.9e-01
wruaco[notmissing]SWE-NSW_03       1.0e-02
wruaco[notmissing]UNK-BEL_21       1.3e-01

                                   exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing]                     0.976      1.025    0.8560     1.112
wz[notmissing, selectedcovariates]     1.781      0.562    1.4891     2.129
wruaco[notmissing]FIN-EAS_03           1.070      0.935    0.7796     1.467
wruaco[notmissing]FIN-EAS_24           0.827      1.209    0.6349     1.078
wruaco[notmissing]FIN-WES_03           1.029      0.972    0.7585     1.396
wruaco[notmissing]FIN-WES_24           0.791      1.265    0.5914     1.057
wruaco[notmissing]FRA-LIL_21           0.085     11.765    0.0255     0.283
wruaco[notmissing]FRA-STR_21           0.729      1.371    0.4378     1.215
wruaco[notmissing]FRA-TOU_21           0.593      1.687    0.3398     1.033
wruaco[notmissing]SWE-NSW_02           0.830      1.205    0.5415     1.271
wruaco[notmissing]SWE-NSW_03           0.570      1.755    0.3707     0.876
wruaco[notmissing]UNK-BEL_21           0.725      1.380    0.4760     1.104

Rsquare= 0.058   (max possible= 0.998 )
Likelihood ratio test= 206  on 12 df,   p=0
Wald test            = 110  on 12 df,   p=0
Score (logrank) test = 187  on 12 df,   p=0,   Robust = 117  p=0

  (Note: the likelihood ratio and score tests assume independence of
     observations within a cluster, the Wald and robust score tests do not).

Updated on 2008-06-04