response: (death=='1') 
covariates: dsmoker 
SNP: 19Q12_MG_446 
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing, 
    selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) + 
    cluster(wdata$id[notmissing]), weights = weight[notmissing], 
    robust = TRUE)

  n= 3468 
                                       coef exp(coef) se(coef) robust se
allele[notmissing]                  0.14752     1.159    0.051    0.0685
wz[notmissing, selectedcovariates]  0.55863     1.748    0.067    0.0917
wruaco[notmissing]FIN-EAS_03        0.03743     1.038    0.124    0.1618
wruaco[notmissing]FIN-EAS_24       -0.20159     0.817    0.102    0.1359
wruaco[notmissing]FIN-WES_03       -0.00156     0.998    0.120    0.1558
wruaco[notmissing]FIN-WES_24       -0.26683     0.766    0.107    0.1479
wruaco[notmissing]FRA-LIL_21       -2.93830     0.053    0.712    0.7408
wruaco[notmissing]FRA-STR_21       -0.25745     0.773    0.195    0.2528
wruaco[notmissing]FRA-TOU_21       -0.59036     0.554    0.236    0.2827
wruaco[notmissing]SWE-NSW_02       -0.25649     0.774    0.168    0.2194
wruaco[notmissing]SWE-NSW_03       -0.61325     0.542    0.179    0.2177
wruaco[notmissing]UNK-BEL_21       -0.39306     0.675    0.178    0.2149
                                         z       p
allele[notmissing]                  2.1531 3.1e-02
wz[notmissing, selectedcovariates]  6.0944 1.1e-09
wruaco[notmissing]FIN-EAS_03        0.2313 8.2e-01
wruaco[notmissing]FIN-EAS_24       -1.4831 1.4e-01
wruaco[notmissing]FIN-WES_03       -0.0100 9.9e-01
wruaco[notmissing]FIN-WES_24       -1.8037 7.1e-02
wruaco[notmissing]FRA-LIL_21       -3.9666 7.3e-05
wruaco[notmissing]FRA-STR_21       -1.0185 3.1e-01
wruaco[notmissing]FRA-TOU_21       -2.0885 3.7e-02
wruaco[notmissing]SWE-NSW_02       -1.1693 2.4e-01
wruaco[notmissing]SWE-NSW_03       -2.8174 4.8e-03
wruaco[notmissing]UNK-BEL_21       -1.8287 6.7e-02

                                   exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing]                     1.159      0.863    1.0133     1.326
wz[notmissing, selectedcovariates]     1.748      0.572    1.4608     2.092
wruaco[notmissing]FIN-EAS_03           1.038      0.963    0.7560     1.426
wruaco[notmissing]FIN-EAS_24           0.817      1.223    0.6263     1.067
wruaco[notmissing]FIN-WES_03           0.998      1.002    0.7357     1.355
wruaco[notmissing]FIN-WES_24           0.766      1.306    0.5730     1.023
wruaco[notmissing]FRA-LIL_21           0.053     18.884    0.0124     0.226
wruaco[notmissing]FRA-STR_21           0.773      1.294    0.4710     1.269
wruaco[notmissing]FRA-TOU_21           0.554      1.805    0.3184     0.964
wruaco[notmissing]SWE-NSW_02           0.774      1.292    0.5034     1.189
wruaco[notmissing]SWE-NSW_03           0.542      1.846    0.3535     0.830
wruaco[notmissing]UNK-BEL_21           0.675      1.482    0.4429     1.029

Rsquare= 0.062   (max possible= 0.998 )
Likelihood ratio test= 222  on 12 df,   p=0
Wald test            = 113  on 12 df,   p=0
Score (logrank) test = 199  on 12 df,   p=0,   Robust = 121  p=0

  (Note: the likelihood ratio and score tests assume independence of
     observations within a cluster, the Wald and robust score tests do not).

Updated on 2008-06-04