response: (death=='1') 
covariates: dsmoker 
SNP: MIA3_MG_454 
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing, 
    selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) + 
    cluster(wdata$id[notmissing]), weights = weight[notmissing], 
    robust = TRUE)

  n= 3488 
                                       coef exp(coef) se(coef) robust se      z
allele[notmissing]                 -0.00855    0.9915   0.0517    0.0667 -0.128
wz[notmissing, selectedcovariates]  0.59774    1.8180   0.0670    0.0916  6.524
wruaco[notmissing]FIN-EAS_03        0.06324    1.0653   0.1257    0.1637  0.386
wruaco[notmissing]FIN-EAS_24       -0.18523    0.8309   0.1016    0.1355 -1.367
wruaco[notmissing]FIN-WES_03        0.05811    1.0598   0.1197    0.1552  0.374
wruaco[notmissing]FIN-WES_24       -0.21975    0.8027   0.1067    0.1477 -1.487
wruaco[notmissing]FRA-LIL_21       -2.45921    0.0855   0.5828    0.6145 -4.002
wruaco[notmissing]FRA-STR_21       -0.20534    0.8144   0.1972    0.2563 -0.801
wruaco[notmissing]FRA-TOU_21       -0.51112    0.5998   0.2314    0.2785 -1.835
wruaco[notmissing]SWE-NSW_02       -0.25277    0.7766   0.1680    0.2190 -1.154
wruaco[notmissing]SWE-NSW_03       -0.61089    0.5429   0.1807    0.2188 -2.793
wruaco[notmissing]UNK-BEL_21       -0.29762    0.7426   0.1748    0.2135 -1.394
                                         p
allele[notmissing]                 9.0e-01
wz[notmissing, selectedcovariates] 6.8e-11
wruaco[notmissing]FIN-EAS_03       7.0e-01
wruaco[notmissing]FIN-EAS_24       1.7e-01
wruaco[notmissing]FIN-WES_03       7.1e-01
wruaco[notmissing]FIN-WES_24       1.4e-01
wruaco[notmissing]FRA-LIL_21       6.3e-05
wruaco[notmissing]FRA-STR_21       4.2e-01
wruaco[notmissing]FRA-TOU_21       6.6e-02
wruaco[notmissing]SWE-NSW_02       2.5e-01
wruaco[notmissing]SWE-NSW_03       5.2e-03
wruaco[notmissing]UNK-BEL_21       1.6e-01

                                   exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing]                    0.9915      1.009    0.8700     1.130
wz[notmissing, selectedcovariates]    1.8180      0.550    1.5192     2.176
wruaco[notmissing]FIN-EAS_03          1.0653      0.939    0.7729     1.468
wruaco[notmissing]FIN-EAS_24          0.8309      1.203    0.6372     1.084
wruaco[notmissing]FIN-WES_03          1.0598      0.944    0.7818     1.437
wruaco[notmissing]FIN-WES_24          0.8027      1.246    0.6009     1.072
wruaco[notmissing]FRA-LIL_21          0.0855     11.696    0.0256     0.285
wruaco[notmissing]FRA-STR_21          0.8144      1.228    0.4928     1.346
wruaco[notmissing]FRA-TOU_21          0.5998      1.667    0.3475     1.035
wruaco[notmissing]SWE-NSW_02          0.7766      1.288    0.5056     1.193
wruaco[notmissing]SWE-NSW_03          0.5429      1.842    0.3536     0.833
wruaco[notmissing]UNK-BEL_21          0.7426      1.347    0.4886     1.128

Rsquare= 0.06   (max possible= 0.998 )
Likelihood ratio test= 216  on 12 df,   p=0
Wald test            = 115  on 12 df,   p=0
Score (logrank) test = 196  on 12 df,   p=0,   Robust = 121  p=0

  (Note: the likelihood ratio and score tests assume independence of
     observations within a cluster, the Wald and robust score tests do not).

Updated on 2008-06-04