response: (death=='1') 
covariates: dsmoker 
SNP: SMAD3_MG_452 
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing, 
    selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) + 
    cluster(wdata$id[notmissing]), weights = weight[notmissing], 
    robust = TRUE)

  n= 3506 
                                      coef exp(coef) se(coef) robust se      z
allele[notmissing]                 -0.0684    0.9339   0.0464    0.0602 -1.137
wz[notmissing, selectedcovariates]  0.5868    1.7983   0.0667    0.0910  6.451
wruaco[notmissing]FIN-EAS_03        0.0694    1.0719   0.1242    0.1617  0.429
wruaco[notmissing]FIN-EAS_24       -0.1904    0.8266   0.1015    0.1350 -1.410
wruaco[notmissing]FIN-WES_03        0.0399    1.0407   0.1195    0.1549  0.258
wruaco[notmissing]FIN-WES_24       -0.2232    0.8000   0.1066    0.1478 -1.510
wruaco[notmissing]FRA-LIL_21       -2.4374    0.0874   0.5831    0.6153 -3.961
wruaco[notmissing]FRA-STR_21       -0.2446    0.7830   0.1968    0.2541 -0.963
wruaco[notmissing]FRA-TOU_21       -0.5217    0.5935   0.2313    0.2783 -1.874
wruaco[notmissing]SWE-NSW_02       -0.2218    0.8011   0.1678    0.2186 -1.014
wruaco[notmissing]SWE-NSW_03       -0.6106    0.5430   0.1805    0.2187 -2.791
wruaco[notmissing]UNK-BEL_21       -0.2914    0.7472   0.1750    0.2142 -1.361
                                         p
allele[notmissing]                 2.6e-01
wz[notmissing, selectedcovariates] 1.1e-10
wruaco[notmissing]FIN-EAS_03       6.7e-01
wruaco[notmissing]FIN-EAS_24       1.6e-01
wruaco[notmissing]FIN-WES_03       8.0e-01
wruaco[notmissing]FIN-WES_24       1.3e-01
wruaco[notmissing]FRA-LIL_21       7.5e-05
wruaco[notmissing]FRA-STR_21       3.4e-01
wruaco[notmissing]FRA-TOU_21       6.1e-02
wruaco[notmissing]SWE-NSW_02       3.1e-01
wruaco[notmissing]SWE-NSW_03       5.3e-03
wruaco[notmissing]UNK-BEL_21       1.7e-01

                                   exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing]                    0.9339      1.071    0.8300     1.051
wz[notmissing, selectedcovariates]    1.7983      0.556    1.5046     2.149
wruaco[notmissing]FIN-EAS_03          1.0719      0.933    0.7807     1.472
wruaco[notmissing]FIN-EAS_24          0.8266      1.210    0.6344     1.077
wruaco[notmissing]FIN-WES_03          1.0407      0.961    0.7683     1.410
wruaco[notmissing]FIN-WES_24          0.8000      1.250    0.5988     1.069
wruaco[notmissing]FRA-LIL_21          0.0874     11.444    0.0262     0.292
wruaco[notmissing]FRA-STR_21          0.7830      1.277    0.4759     1.288
wruaco[notmissing]FRA-TOU_21          0.5935      1.685    0.3440     1.024
wruaco[notmissing]SWE-NSW_02          0.8011      1.248    0.5219     1.230
wruaco[notmissing]SWE-NSW_03          0.5430      1.841    0.3537     0.834
wruaco[notmissing]UNK-BEL_21          0.7472      1.338    0.4911     1.137

Rsquare= 0.06   (max possible= 0.998 )
Likelihood ratio test= 216  on 12 df,   p=0
Wald test            = 115  on 12 df,   p=0
Score (logrank) test = 196  on 12 df,   p=0,   Robust = 121  p=0

  (Note: the likelihood ratio and score tests assume independence of
     observations within a cluster, the Wald and robust score tests do not).

Updated on 2008-06-04