Logistic regression for CHD history at the end of follow-up (healthy subjects at baseline who survived) model for 10Q11_21_MG

response: (chd1 == '2') 
covariates: mortage sex 
SNP: 10Q11_21_MG_458 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4303  -0.8929  -0.6854   1.3716   2.0730  

Coefficients:
                                        Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -9.956695   0.536428 -18.561  < 2e-16
allele[notmissing]                      0.023011   0.089755   0.256 0.797661
z[notmissing, ]1                        0.081901   0.006866  11.929  < 2e-16
z[notmissing, ]2                        1.233290   0.154956   7.959 1.73e-15
as.factor(ruaco[notmissing])FIN-EAS_03  1.090563   0.175329   6.220 4.97e-10
as.factor(ruaco[notmissing])FIN-EAS_24  0.496956   0.159373   3.118 0.001820
as.factor(ruaco[notmissing])FIN-WES_03  0.551511   0.195875   2.816 0.004868
as.factor(ruaco[notmissing])FIN-WES_24  0.301322   0.184018   1.637 0.101534
as.factor(ruaco[notmissing])FRA-LIL_21 -0.067653   0.290628  -0.233 0.815931
as.factor(ruaco[notmissing])FRA-STR_21  0.058129   0.249611   0.233 0.815855
as.factor(ruaco[notmissing])FRA-TOU_21  0.144925   0.263622   0.550 0.582494
as.factor(ruaco[notmissing])SWE-NSW_02  0.354254   0.273691   1.294 0.195543
as.factor(ruaco[notmissing])SWE-NSW_03 -0.231296   0.368162  -0.628 0.529842
as.factor(ruaco[notmissing])UNK-BEL_21  0.612799   0.180689   3.391 0.000695
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ** 
as.factor(ruaco[notmissing])FIN-WES_03 ** 
as.factor(ruaco[notmissing])FIN-WES_24    
as.factor(ruaco[notmissing])FRA-LIL_21    
as.factor(ruaco[notmissing])FRA-STR_21    
as.factor(ruaco[notmissing])FRA-TOU_21    
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03    
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2943.0  on 2319  degrees of freedom
Residual deviance: 2711.3  on 2306  degrees of freedom
AIC: 2739.3

Number of Fisher Scoring iterations: 4
Updated on 2008-06-04