Logistic regression for CHD history at the end of follow-up (healthy subjects at baseline who survived) model for 19Q12_MG

response: (chd1 == '2') 
covariates: mortage sex 
SNP: 19Q12_MG_446 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5782  -0.8887  -0.6879   1.3721   2.0738  

Coefficients:
                                        Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -9.850629   0.537498 -18.327  < 2e-16
allele[notmissing]                     -0.006576   0.092262  -0.071 0.943176
z[notmissing, ]1                        0.081186   0.006838  11.873  < 2e-16
z[notmissing, ]2                        1.198640   0.153456   7.811 5.68e-15
as.factor(ruaco[notmissing])FIN-EAS_03  1.050430   0.175681   5.979 2.24e-09
as.factor(ruaco[notmissing])FIN-EAS_24  0.495992   0.159577   3.108 0.001883
as.factor(ruaco[notmissing])FIN-WES_03  0.512290   0.195813   2.616 0.008891
as.factor(ruaco[notmissing])FIN-WES_24  0.290829   0.182040   1.598 0.110131
as.factor(ruaco[notmissing])FRA-LIL_21 -0.016289   0.286531  -0.057 0.954665
as.factor(ruaco[notmissing])FRA-STR_21 -0.018683   0.253555  -0.074 0.941262
as.factor(ruaco[notmissing])FRA-TOU_21  0.044824   0.264243   0.170 0.865301
as.factor(ruaco[notmissing])SWE-NSW_02  0.312045   0.273467   1.141 0.253842
as.factor(ruaco[notmissing])SWE-NSW_03 -0.304238   0.366288  -0.831 0.406200
as.factor(ruaco[notmissing])UNK-BEL_21  0.625367   0.180846   3.458 0.000544
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ** 
as.factor(ruaco[notmissing])FIN-WES_03 ** 
as.factor(ruaco[notmissing])FIN-WES_24    
as.factor(ruaco[notmissing])FRA-LIL_21    
as.factor(ruaco[notmissing])FRA-STR_21    
as.factor(ruaco[notmissing])FRA-TOU_21    
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03    
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2948.0  on 2317  degrees of freedom
Residual deviance: 2716.1  on 2304  degrees of freedom
AIC: 2744.1

Number of Fisher Scoring iterations: 4
Updated on 2008-06-04