Logistic regression for CHD history at the end of follow-up (healthy subjects at baseline who survived) model for CELSR2_MG

response: (chd1 == '2') 
covariates: mortage sex 
SNP: CELSR2_MG_438 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5589  -0.8858  -0.6846   1.3780   2.0792  

Coefficients:
                                        Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -9.871386   0.532087 -18.552  < 2e-16
allele[notmissing]                     -0.004433   0.082304  -0.054 0.957049
z[notmissing, ]1                        0.081286   0.006849  11.868  < 2e-16
z[notmissing, ]2                        1.207421   0.153749   7.853 4.06e-15
as.factor(ruaco[notmissing])FIN-EAS_03  1.048485   0.175699   5.968 2.41e-09
as.factor(ruaco[notmissing])FIN-EAS_24  0.494973   0.159739   3.099 0.001944
as.factor(ruaco[notmissing])FIN-WES_03  0.527201   0.195256   2.700 0.006933
as.factor(ruaco[notmissing])FIN-WES_24  0.305098   0.181833   1.678 0.093368
as.factor(ruaco[notmissing])FRA-LIL_21 -0.041812   0.284174  -0.147 0.883026
as.factor(ruaco[notmissing])FRA-STR_21 -0.031479   0.246154  -0.128 0.898240
as.factor(ruaco[notmissing])FRA-TOU_21  0.050885   0.260459   0.195 0.845106
as.factor(ruaco[notmissing])SWE-NSW_02  0.311578   0.272734   1.142 0.253278
as.factor(ruaco[notmissing])SWE-NSW_03 -0.290899   0.365811  -0.795 0.426486
as.factor(ruaco[notmissing])UNK-BEL_21  0.621276   0.180113   3.449 0.000562
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ** 
as.factor(ruaco[notmissing])FIN-WES_03 ** 
as.factor(ruaco[notmissing])FIN-WES_24 .  
as.factor(ruaco[notmissing])FRA-LIL_21    
as.factor(ruaco[notmissing])FRA-STR_21    
as.factor(ruaco[notmissing])FRA-TOU_21    
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03    
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2971.4  on 2345  degrees of freedom
Residual deviance: 2738.1  on 2332  degrees of freedom
AIC: 2766.1

Number of Fisher Scoring iterations: 4
Updated on 2008-06-04