response: (chd1 == '2') 
covariates: mortage sex 
SNP: MIA3_MG_454 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4840  -0.8846  -0.6940   1.3694   2.0706  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -1.001e+01  5.399e-01 -18.539  < 2e-16
allele[notmissing]                     -1.686e-01  9.744e-02  -1.731 0.083509
z[notmissing, ]1                        8.132e-02  6.877e-03  11.826  < 2e-16
z[notmissing, ]2                        1.224e+00  1.550e-01   7.897 2.86e-15
as.factor(ruaco[notmissing])FIN-EAS_03  1.116e+00  1.758e-01   6.347 2.19e-10
as.factor(ruaco[notmissing])FIN-EAS_24  5.009e-01  1.589e-01   3.153 0.001618
as.factor(ruaco[notmissing])FIN-WES_03  5.004e-01  1.969e-01   2.541 0.011041
as.factor(ruaco[notmissing])FIN-WES_24  3.103e-01  1.834e-01   1.691 0.090750
as.factor(ruaco[notmissing])FRA-LIL_21  7.028e-04  2.844e-01   0.002 0.998028
as.factor(ruaco[notmissing])FRA-STR_21  2.343e-02  2.527e-01   0.093 0.926127
as.factor(ruaco[notmissing])FRA-TOU_21  8.016e-02  2.619e-01   0.306 0.759574
as.factor(ruaco[notmissing])SWE-NSW_02  2.863e-01  2.723e-01   1.052 0.293008
as.factor(ruaco[notmissing])SWE-NSW_03 -3.085e-01  3.663e-01  -0.842 0.399654
as.factor(ruaco[notmissing])UNK-BEL_21  5.954e-01  1.809e-01   3.292 0.000996
                                          
(Intercept)                            ***
allele[notmissing]                     .  
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ** 
as.factor(ruaco[notmissing])FIN-WES_03 *  
as.factor(ruaco[notmissing])FIN-WES_24 .  
as.factor(ruaco[notmissing])FRA-LIL_21    
as.factor(ruaco[notmissing])FRA-STR_21    
as.factor(ruaco[notmissing])FRA-TOU_21    
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03    
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2947.9  on 2324  degrees of freedom
Residual deviance: 2714.0  on 2311  degrees of freedom
AIC: 2742.0

Number of Fisher Scoring iterations: 4

Updated on 2008-06-04