Logistic regression for CHD history at the end of follow-up (healthy subjects at baseline who survived) model for MTHFD1L_MG

response: (chd1 == '2') 
covariates: mortage sex 
SNP: MTHFD1L_MG_449 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4194  -0.8901  -0.6846   1.3718   2.0782  

Coefficients:
                                        Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -9.971075   0.565347 -17.637  < 2e-16
allele[notmissing]                     -0.106645   0.211933  -0.503 0.614822
z[notmissing, ]1                        0.080942   0.006833  11.846  < 2e-16
z[notmissing, ]2                        1.226145   0.154135   7.955 1.79e-15
as.factor(ruaco[notmissing])FIN-EAS_03  1.071057   0.175190   6.114 9.73e-10
as.factor(ruaco[notmissing])FIN-EAS_24  0.508645   0.158622   3.207 0.001343
as.factor(ruaco[notmissing])FIN-WES_03  0.539790   0.195354   2.763 0.005725
as.factor(ruaco[notmissing])FIN-WES_24  0.319140   0.183211   1.742 0.081522
as.factor(ruaco[notmissing])FRA-LIL_21  0.007667   0.284069   0.027 0.978468
as.factor(ruaco[notmissing])FRA-STR_21  0.036362   0.248583   0.146 0.883704
as.factor(ruaco[notmissing])FRA-TOU_21  0.089368   0.261684   0.342 0.732720
as.factor(ruaco[notmissing])SWE-NSW_02  0.294748   0.271957   1.084 0.278452
as.factor(ruaco[notmissing])SWE-NSW_03 -0.279983   0.366104  -0.765 0.444412
as.factor(ruaco[notmissing])UNK-BEL_21  0.612435   0.179883   3.405 0.000663
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ** 
as.factor(ruaco[notmissing])FIN-WES_03 ** 
as.factor(ruaco[notmissing])FIN-WES_24 .  
as.factor(ruaco[notmissing])FRA-LIL_21    
as.factor(ruaco[notmissing])FRA-STR_21    
as.factor(ruaco[notmissing])FRA-TOU_21    
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03    
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2966.0  on 2340  degrees of freedom
Residual deviance: 2733.7  on 2327  degrees of freedom
AIC: 2761.7

Number of Fisher Scoring iterations: 4
Updated on 2008-06-04