Logistic regression for CHD history at the end of follow-up (healthy subjects at baseline who survived) model for SMAD3_MG

response: (chd1 == '2') 
covariates: mortage sex 
SNP: SMAD3_MG_452 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.4584  -0.8947  -0.6850   1.3769   2.0940  

Coefficients:
                                        Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -9.905321   0.532701 -18.595  < 2e-16
allele[notmissing]                     -0.034909   0.078957  -0.442 0.658396
z[notmissing, ]1                        0.081079   0.006838  11.857  < 2e-16
z[notmissing, ]2                        1.231455   0.154157   7.988 1.37e-15
as.factor(ruaco[notmissing])FIN-EAS_03  1.081054   0.175435   6.162 7.18e-10
as.factor(ruaco[notmissing])FIN-EAS_24  0.512179   0.158594   3.229 0.001240
as.factor(ruaco[notmissing])FIN-WES_03  0.543006   0.195381   2.779 0.005449
as.factor(ruaco[notmissing])FIN-WES_24  0.319126   0.183189   1.742 0.081498
as.factor(ruaco[notmissing])FRA-LIL_21  0.015845   0.284823   0.056 0.955634
as.factor(ruaco[notmissing])FRA-STR_21  0.040853   0.248695   0.164 0.869520
as.factor(ruaco[notmissing])FRA-TOU_21  0.095200   0.261576   0.364 0.715898
as.factor(ruaco[notmissing])SWE-NSW_02  0.309330   0.272616   1.135 0.256512
as.factor(ruaco[notmissing])SWE-NSW_03 -0.275117   0.366580  -0.750 0.452956
as.factor(ruaco[notmissing])UNK-BEL_21  0.611992   0.181933   3.364 0.000769
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ** 
as.factor(ruaco[notmissing])FIN-WES_03 ** 
as.factor(ruaco[notmissing])FIN-WES_24 .  
as.factor(ruaco[notmissing])FRA-LIL_21    
as.factor(ruaco[notmissing])FRA-STR_21    
as.factor(ruaco[notmissing])FRA-TOU_21    
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03    
as.factor(ruaco[notmissing])UNK-BEL_21 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2964.1  on 2338  degrees of freedom
Residual deviance: 2731.3  on 2325  degrees of freedom
AIC: 2759.3

Number of Fisher Scoring iterations: 4
Updated on 2008-06-04