response: (chd1 == '2' | basemi1=='1') 
covariates: mortage sex 
SNP: 10Q11_21_MG_458 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5455  -1.0355  -0.9228   1.2345   1.7031  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -10.815970   0.431763 -25.051  < 2e-16
allele[notmissing]                       0.002937   0.071545   0.041   0.9673
z[notmissing, ]1                         0.105590   0.005588  18.896  < 2e-16
z[notmissing, ]2                         1.254581   0.121602  10.317  < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03   1.021026   0.139498   7.319 2.49e-13
as.factor(ruaco[notmissing])FIN-EAS_24   0.714843   0.119779   5.968 2.40e-09
as.factor(ruaco[notmissing])FIN-WES_03   0.360195   0.157796   2.283   0.0225
as.factor(ruaco[notmissing])FIN-WES_24   0.159564   0.145366   1.098   0.2723
as.factor(ruaco[notmissing])FRA-LIL_21  -0.550456   0.270426  -2.036   0.0418
as.factor(ruaco[notmissing])FRA-STR_21  -0.421202   0.231485  -1.820   0.0688
as.factor(ruaco[notmissing])FRA-TOU_21  -0.336679   0.247651  -1.359   0.1740
as.factor(ruaco[notmissing])SWE-NSW_02   0.162523   0.230475   0.705   0.4807
as.factor(ruaco[notmissing])SWE-NSW_03   0.612755   0.237914   2.576   0.0100
as.factor(ruaco[notmissing])UNK-BEL_21   0.283404   0.157946   1.794   0.0728
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 *  
as.factor(ruaco[notmissing])FIN-WES_24    
as.factor(ruaco[notmissing])FRA-LIL_21 *  
as.factor(ruaco[notmissing])FRA-STR_21 .  
as.factor(ruaco[notmissing])FRA-TOU_21    
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03 *  
as.factor(ruaco[notmissing])UNK-BEL_21 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4607.7  on 3011  degrees of freedom
Residual deviance: 4026.0  on 2998  degrees of freedom
AIC: 4054

Number of Fisher Scoring iterations: 4

Updated on 2008-06-04