response: (chd1 == '2' | basemi1=='1') 
covariates: mortage sex 
SNP: 19Q12_MG_446 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5624  -1.0348  -0.9237   1.2352   1.7183  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -10.657166   0.432388 -24.647  < 2e-16
allele[notmissing]                       0.095076   0.072766   1.307   0.1914
z[notmissing, ]1                         0.104938   0.005573  18.830  < 2e-16
z[notmissing, ]2                         1.232135   0.120828  10.197  < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03   0.977180   0.139606   7.000 2.57e-12
as.factor(ruaco[notmissing])FIN-EAS_24   0.686538   0.120491   5.698 1.21e-08
as.factor(ruaco[notmissing])FIN-WES_03   0.294812   0.157858   1.868   0.0618
as.factor(ruaco[notmissing])FIN-WES_24   0.138025   0.143767   0.960   0.3370
as.factor(ruaco[notmissing])FRA-LIL_21  -0.513580   0.267055  -1.923   0.0545
as.factor(ruaco[notmissing])FRA-STR_21  -0.539425   0.236701  -2.279   0.0227
as.factor(ruaco[notmissing])FRA-TOU_21  -0.437511   0.247860  -1.765   0.0775
as.factor(ruaco[notmissing])SWE-NSW_02   0.187423   0.224693   0.834   0.4042
as.factor(ruaco[notmissing])SWE-NSW_03   0.542975   0.234223   2.318   0.0204
as.factor(ruaco[notmissing])UNK-BEL_21   0.265947   0.158398   1.679   0.0932
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 .  
as.factor(ruaco[notmissing])FIN-WES_24    
as.factor(ruaco[notmissing])FRA-LIL_21 .  
as.factor(ruaco[notmissing])FRA-STR_21 *  
as.factor(ruaco[notmissing])FRA-TOU_21 .  
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03 *  
as.factor(ruaco[notmissing])UNK-BEL_21 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4607.9  on 3007  degrees of freedom
Residual deviance: 4026.6  on 2994  degrees of freedom
AIC: 4054.6

Number of Fisher Scoring iterations: 4

Updated on 2008-06-04