response: (chd1 == '2' | basemi1=='1') 
covariates: mortage sex 
SNP: CELSR2_MG_438 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5678  -1.0298  -0.9223   1.2354   1.7254  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -10.789135   0.428542 -25.176  < 2e-16
allele[notmissing]                       0.054929   0.066300   0.828   0.4074
z[notmissing, ]1                         0.104928   0.005564  18.857  < 2e-16
z[notmissing, ]2                         1.248223   0.120756  10.337  < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03   0.991638   0.139172   7.125 1.04e-12
as.factor(ruaco[notmissing])FIN-EAS_24   0.704252   0.120091   5.864 4.51e-09
as.factor(ruaco[notmissing])FIN-WES_03   0.320595   0.157554   2.035   0.0419
as.factor(ruaco[notmissing])FIN-WES_24   0.159412   0.143627   1.110   0.2670
as.factor(ruaco[notmissing])FRA-LIL_21  -0.535144   0.264782  -2.021   0.0433
as.factor(ruaco[notmissing])FRA-STR_21  -0.525804   0.227831  -2.308   0.0210
as.factor(ruaco[notmissing])FRA-TOU_21  -0.441864   0.243918  -1.812   0.0701
as.factor(ruaco[notmissing])SWE-NSW_02   0.198524   0.223783   0.887   0.3750
as.factor(ruaco[notmissing])SWE-NSW_03   0.573203   0.233752   2.452   0.0142
as.factor(ruaco[notmissing])UNK-BEL_21   0.300550   0.156871   1.916   0.0554
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 *  
as.factor(ruaco[notmissing])FIN-WES_24    
as.factor(ruaco[notmissing])FRA-LIL_21 *  
as.factor(ruaco[notmissing])FRA-STR_21 *  
as.factor(ruaco[notmissing])FRA-TOU_21 .  
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03 *  
as.factor(ruaco[notmissing])UNK-BEL_21 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4662.1  on 3045  degrees of freedom
Residual deviance: 4072.2  on 3032  degrees of freedom
AIC: 4100.2

Number of Fisher Scoring iterations: 4

Updated on 2008-06-04