response: (chd1 == '2' | basemi1=='1') 
covariates: mortage sex 
SNP: MIA3_MG_454 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5428  -1.0341  -0.9033   1.2347   1.7613  

Coefficients:
                                        Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -10.85138    0.43445 -24.977  < 2e-16
allele[notmissing]                      -0.13983    0.07598  -1.840   0.0657
z[notmissing, ]1                         0.10456    0.00559  18.703  < 2e-16
z[notmissing, ]2                         1.26686    0.12187  10.396  < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03   1.03198    0.14050   7.345 2.06e-13
as.factor(ruaco[notmissing])FIN-EAS_24   0.72251    0.11955   6.043 1.51e-09
as.factor(ruaco[notmissing])FIN-WES_03   0.32142    0.15827   2.031   0.0423
as.factor(ruaco[notmissing])FIN-WES_24   0.17056    0.14517   1.175   0.2400
as.factor(ruaco[notmissing])FRA-LIL_21  -0.49063    0.26535  -1.849   0.0645
as.factor(ruaco[notmissing])FRA-STR_21  -0.45611    0.23414  -1.948   0.0514
as.factor(ruaco[notmissing])FRA-TOU_21  -0.40116    0.24576  -1.632   0.1026
as.factor(ruaco[notmissing])SWE-NSW_02   0.17717    0.22339   0.793   0.4277
as.factor(ruaco[notmissing])SWE-NSW_03   0.56496    0.23396   2.415   0.0157
as.factor(ruaco[notmissing])UNK-BEL_21   0.26487    0.15799   1.676   0.0936
                                          
(Intercept)                            ***
allele[notmissing]                     .  
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 *  
as.factor(ruaco[notmissing])FIN-WES_24    
as.factor(ruaco[notmissing])FRA-LIL_21 .  
as.factor(ruaco[notmissing])FRA-STR_21 .  
as.factor(ruaco[notmissing])FRA-TOU_21    
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03 *  
as.factor(ruaco[notmissing])UNK-BEL_21 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4610.5  on 3019  degrees of freedom
Residual deviance: 4035.0  on 3006  degrees of freedom
AIC: 4063

Number of Fisher Scoring iterations: 4

Updated on 2008-06-04