response: (chd1 == '2' | basemi1=='1') 
covariates: mortage sex 
SNP: MTHFD1L_MG_449 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"), 
    offset = log(1/prob[notmissing]))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5313  -1.0286  -0.9237   1.2346   1.7138  

Coefficients:
                                        Estimate Std. Error z value Pr(>|z|)
(Intercept)                            -10.76526    0.45569 -23.624  < 2e-16
allele[notmissing]                       0.01247    0.16456   0.076   0.9396
z[notmissing, ]1                         0.10477    0.00556  18.843  < 2e-16
z[notmissing, ]2                         1.27049    0.12116  10.486  < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03   1.01371    0.13926   7.279 3.36e-13
as.factor(ruaco[notmissing])FIN-EAS_24   0.72881    0.11949   6.100 1.06e-09
as.factor(ruaco[notmissing])FIN-WES_03   0.34308    0.15773   2.175   0.0296
as.factor(ruaco[notmissing])FIN-WES_24   0.17629    0.14510   1.215   0.2244
as.factor(ruaco[notmissing])FRA-LIL_21  -0.48197    0.26511  -1.818   0.0691
as.factor(ruaco[notmissing])FRA-STR_21  -0.44280    0.23053  -1.921   0.0548
as.factor(ruaco[notmissing])FRA-TOU_21  -0.38496    0.24561  -1.567   0.1170
as.factor(ruaco[notmissing])SWE-NSW_02   0.19486    0.22311   0.873   0.3825
as.factor(ruaco[notmissing])SWE-NSW_03   0.58751    0.23419   2.509   0.0121
as.factor(ruaco[notmissing])UNK-BEL_21   0.28079    0.15731   1.785   0.0743
                                          
(Intercept)                            ***
allele[notmissing]                        
z[notmissing, ]1                       ***
z[notmissing, ]2                       ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 ***
as.factor(ruaco[notmissing])FIN-WES_03 *  
as.factor(ruaco[notmissing])FIN-WES_24    
as.factor(ruaco[notmissing])FRA-LIL_21 .  
as.factor(ruaco[notmissing])FRA-STR_21 .  
as.factor(ruaco[notmissing])FRA-TOU_21    
as.factor(ruaco[notmissing])SWE-NSW_02    
as.factor(ruaco[notmissing])SWE-NSW_03 *  
as.factor(ruaco[notmissing])UNK-BEL_21 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4639.7  on 3035  degrees of freedom
Residual deviance: 4056.5  on 3022  degrees of freedom
AIC: 4084.5

Number of Fisher Scoring iterations: 4

Updated on 2008-06-04