response: (chd3=='1') 
covariates: chdage3 sex nonhdl hdla bmi bpm dsmoker hisdiab1 
SNP: MTHFD1L_MG_449 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + rua3[notmissing], family = binomial(link = "logit"))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5131  -0.9773  -0.6662   1.1969   2.1728  

Coefficients:
                                 Estimate Std. Error z value Pr(>|z|)   
(Intercept)                     -3.136953   1.404547  -2.233  0.02552 * 
allele[notmissing]               0.270695   0.346534   0.781  0.43471   
z[notmissing, ]1                 0.038710   0.012296   3.148  0.00164 **
z[notmissing, ]2                -0.238381   0.291379  -0.818  0.41329   
z[notmissing, ]3                -0.165628   0.074707  -2.217  0.02662 * 
z[notmissing, ]4                 0.167029   0.269592   0.620  0.53555   
z[notmissing, ]5                 0.031101   0.020447   1.521  0.12825   
z[notmissing, ]6                 0.002712   0.005920   0.458  0.64695   
z[notmissing, ]7                 0.415306   0.179924   2.308  0.02099 * 
z[notmissing, ]8                -0.042211   0.253148  -0.167  0.86757   
rua3[notmissing]FINRISK         -0.457800   0.216917  -2.110  0.03482 * 
rua3[notmissing]Northern Sweden -0.931977   0.464108  -2.008  0.04463 * 
rua3[notmissing]PRIME / Belfast -0.763319   0.354224  -2.155  0.03117 * 
rua3[notmissing]PRIME / France  -0.997898   0.483941  -2.062  0.03921 * 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1035.20  on 794  degrees of freedom
Residual deviance:  966.94  on 781  degrees of freedom
  (15 observations deleted due to missingness)
AIC: 994.94

Number of Fisher Scoring iterations: 4

Updated on 2008-06-04