response: (chd3=='1') 
covariates: chdage3 sex nonhdl hdla bmi bpm dsmoker hisdiab1 
SNP: SMAD3_MG_452 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + rua3[notmissing], family = binomial(link = "logit"))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.5063  -0.9736  -0.6744   1.2041   2.1462  

Coefficients:
                                 Estimate Std. Error z value Pr(>|z|)   
(Intercept)                     -3.546025   1.321982  -2.682  0.00731 **
allele[notmissing]              -0.065752   0.131803  -0.499  0.61788   
z[notmissing, ]1                 0.039481   0.012253   3.222  0.00127 **
z[notmissing, ]2                -0.241195   0.291675  -0.827  0.40828   
z[notmissing, ]3                -0.161694   0.074509  -2.170  0.03000 * 
z[notmissing, ]4                 0.180072   0.269561   0.668  0.50412   
z[notmissing, ]5                 0.032064   0.020375   1.574  0.11555   
z[notmissing, ]6                 0.002691   0.005916   0.455  0.64914   
z[notmissing, ]7                 0.419607   0.180004   2.331  0.01975 * 
z[notmissing, ]8                -0.050166   0.253267  -0.198  0.84298   
rua3[notmissing]FINRISK         -0.448338   0.216928  -2.067  0.03876 * 
rua3[notmissing]Northern Sweden -0.891335   0.464525  -1.919  0.05501 . 
rua3[notmissing]PRIME / Belfast -0.704329   0.360070  -1.956  0.05045 . 
rua3[notmissing]PRIME / France  -0.968181   0.481906  -2.009  0.04453 * 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1034.32  on 793  degrees of freedom
Residual deviance:  966.87  on 780  degrees of freedom
  (15 observations deleted due to missingness)
AIC: 994.87

Number of Fisher Scoring iterations: 4

Updated on 2008-06-04