response: hdla
covariates: age1 sex
SNP: MTHFD1L_MG_449
Call:
lm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]))
Residuals:
Min 1Q Median 3Q Max
-0.87621 -0.22520 -0.04077 0.17379 1.89493
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 1.4831218 0.0886209 16.736 < 2e-16
allele[notmissing] 0.0020619 0.0366049 0.056 0.955086
z[notmissing, ]1 -0.0007341 0.0011485 -0.639 0.522784
z[notmissing, ]2 -0.2518972 0.0287464 -8.763 < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03 0.1130168 0.0341474 3.310 0.000953
as.factor(ruaco[notmissing])FIN-EAS_24 0.0238716 0.0298921 0.799 0.424632
as.factor(ruaco[notmissing])FIN-WES_03 0.0590086 0.0344837 1.711 0.087216
as.factor(ruaco[notmissing])FIN-WES_24 0.1144537 0.0352072 3.251 0.001172
as.factor(ruaco[notmissing])FRA-LIL_21 0.1633110 0.0590782 2.764 0.005762
as.factor(ruaco[notmissing])FRA-STR_21 0.0465878 0.0477664 0.975 0.329529
as.factor(ruaco[notmissing])FRA-TOU_21 0.1122705 0.0563711 1.992 0.046563
as.factor(ruaco[notmissing])SWE-NSW_02 0.1532264 0.0454090 3.374 0.000756
as.factor(ruaco[notmissing])SWE-NSW_03 0.0476949 0.0437209 1.091 0.275466
as.factor(ruaco[notmissing])UNK-BEL_21 -0.0016064 0.0335379 -0.048 0.961803
(Intercept) ***
allele[notmissing]
z[notmissing, ]1
z[notmissing, ]2 ***
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24
as.factor(ruaco[notmissing])FIN-WES_03 .
as.factor(ruaco[notmissing])FIN-WES_24 **
as.factor(ruaco[notmissing])FRA-LIL_21 **
as.factor(ruaco[notmissing])FRA-STR_21
as.factor(ruaco[notmissing])FRA-TOU_21 *
as.factor(ruaco[notmissing])SWE-NSW_02 ***
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 0.3305 on 1796 degrees of freedom
Multiple R-squared: 0.09329, Adjusted R-squared: 0.08673
F-statistic: 14.21 on 13 and 1796 DF, p-value: < 2.2e-16
Updated on 2008-06-04