response: hdla
covariates: age1 sex
SNP: SMAD3_MG_452
Call:
lm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]))
Residuals:
Min 1Q Median 3Q Max
-0.87141 -0.22323 -0.03948 0.17527 1.89258
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 1.4779585 0.0824605 17.923 < 2e-16
allele[notmissing] -0.0116793 0.0132418 -0.882 0.377891
z[notmissing, ]1 -0.0007838 0.0011502 -0.681 0.495677
z[notmissing, ]2 -0.2523471 0.0287591 -8.774 < 2e-16
as.factor(ruaco[notmissing])FIN-EAS_03 0.1129698 0.0342759 3.296 0.001000
as.factor(ruaco[notmissing])FIN-EAS_24 0.0234965 0.0298735 0.787 0.431659
as.factor(ruaco[notmissing])FIN-WES_03 0.0586891 0.0344935 1.701 0.089031
as.factor(ruaco[notmissing])FIN-WES_24 0.1151140 0.0351749 3.273 0.001086
as.factor(ruaco[notmissing])FRA-LIL_21 0.1681467 0.0593134 2.835 0.004636
as.factor(ruaco[notmissing])FRA-STR_21 0.0479110 0.0477931 1.002 0.316253
as.factor(ruaco[notmissing])FRA-TOU_21 0.1110547 0.0563820 1.970 0.049028
as.factor(ruaco[notmissing])SWE-NSW_02 0.1559106 0.0455171 3.425 0.000628
as.factor(ruaco[notmissing])SWE-NSW_03 0.0488687 0.0437479 1.117 0.264122
as.factor(ruaco[notmissing])UNK-BEL_21 0.0015416 0.0337338 0.046 0.963556
(Intercept) ***
allele[notmissing]
z[notmissing, ]1
z[notmissing, ]2 ***
as.factor(ruaco[notmissing])FIN-EAS_03 **
as.factor(ruaco[notmissing])FIN-EAS_24
as.factor(ruaco[notmissing])FIN-WES_03 .
as.factor(ruaco[notmissing])FIN-WES_24 **
as.factor(ruaco[notmissing])FRA-LIL_21 **
as.factor(ruaco[notmissing])FRA-STR_21
as.factor(ruaco[notmissing])FRA-TOU_21 *
as.factor(ruaco[notmissing])SWE-NSW_02 ***
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 0.3305 on 1795 degrees of freedom
Multiple R-squared: 0.09366, Adjusted R-squared: 0.0871
F-statistic: 14.27 on 13 and 1795 DF, p-value: < 2.2e-16
Updated on 2008-06-04