response: (chd1=='2')
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: 10Q11_21_MG_458
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing,
selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=2721 (41 observations deleted due to missingness)
coef exp(coef) se(coef) robust se
allele[notmissing] 0.00604 1.006 0.07104 0.08806
wz[notmissing, selectedcovariates]1 0.23235 1.262 0.02911 0.05157
wz[notmissing, selectedcovariates]2 -0.95586 0.384 0.13551 0.16975
wz[notmissing, selectedcovariates]3 0.00982 1.010 0.00949 0.01125
wz[notmissing, selectedcovariates]4 0.01441 1.015 0.00269 0.00346
wz[notmissing, selectedcovariates]5 0.46006 1.584 0.09027 0.12401
wz[notmissing, selectedcovariates]6 0.73709 2.090 0.12151 0.17577
wruaco[notmissing]FIN-EAS_03 1.11213 3.041 0.14995 0.18804
wruaco[notmissing]FIN-EAS_24 0.70280 2.019 0.13981 0.17408
wruaco[notmissing]FIN-WES_03 0.55753 1.746 0.16793 0.20467
wruaco[notmissing]FIN-WES_24 0.44194 1.556 0.15774 0.22046
wruaco[notmissing]FRA-LIL_21 0.40693 1.502 0.24165 0.34979
wruaco[notmissing]FRA-STR_21 0.44395 1.559 0.21807 0.29304
wruaco[notmissing]FRA-TOU_21 0.96894 2.635 0.22520 0.29940
wruaco[notmissing]SWE-NSW_02 0.75381 2.125 0.23856 0.31460
wruaco[notmissing]SWE-NSW_03 0.28155 1.325 0.32761 0.39586
wruaco[notmissing]UNK-BEL_21 0.95216 2.591 0.16725 0.21821
z p
allele[notmissing] 0.0686 9.5e-01
wz[notmissing, selectedcovariates]1 4.5052 6.6e-06
wz[notmissing, selectedcovariates]2 -5.6311 1.8e-08
wz[notmissing, selectedcovariates]3 0.8722 3.8e-01
wz[notmissing, selectedcovariates]4 4.1674 3.1e-05
wz[notmissing, selectedcovariates]5 3.7099 2.1e-04
wz[notmissing, selectedcovariates]6 4.1935 2.7e-05
wruaco[notmissing]FIN-EAS_03 5.9142 3.3e-09
wruaco[notmissing]FIN-EAS_24 4.0372 5.4e-05
wruaco[notmissing]FIN-WES_03 2.7240 6.4e-03
wruaco[notmissing]FIN-WES_24 2.0046 4.5e-02
wruaco[notmissing]FRA-LIL_21 1.1633 2.4e-01
wruaco[notmissing]FRA-STR_21 1.5150 1.3e-01
wruaco[notmissing]FRA-TOU_21 3.2362 1.2e-03
wruaco[notmissing]SWE-NSW_02 2.3961 1.7e-02
wruaco[notmissing]SWE-NSW_03 0.7112 4.8e-01
wruaco[notmissing]UNK-BEL_21 4.3636 1.3e-05
exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing] 1.006 0.994 0.847 1.196
wz[notmissing, selectedcovariates]1 1.262 0.793 1.140 1.396
wz[notmissing, selectedcovariates]2 0.384 2.601 0.276 0.536
wz[notmissing, selectedcovariates]3 1.010 0.990 0.988 1.032
wz[notmissing, selectedcovariates]4 1.015 0.986 1.008 1.021
wz[notmissing, selectedcovariates]5 1.584 0.631 1.242 2.020
wz[notmissing, selectedcovariates]6 2.090 0.479 1.481 2.949
wruaco[notmissing]FIN-EAS_03 3.041 0.329 2.103 4.396
wruaco[notmissing]FIN-EAS_24 2.019 0.495 1.436 2.841
wruaco[notmissing]FIN-WES_03 1.746 0.573 1.169 2.608
wruaco[notmissing]FIN-WES_24 1.556 0.643 1.010 2.397
wruaco[notmissing]FRA-LIL_21 1.502 0.666 0.757 2.982
wruaco[notmissing]FRA-STR_21 1.559 0.641 0.878 2.769
wruaco[notmissing]FRA-TOU_21 2.635 0.379 1.465 4.739
wruaco[notmissing]SWE-NSW_02 2.125 0.471 1.147 3.937
wruaco[notmissing]SWE-NSW_03 1.325 0.755 0.610 2.879
wruaco[notmissing]UNK-BEL_21 2.591 0.386 1.690 3.974
Rsquare= 0.104 (max possible= 0.986 )
Likelihood ratio test= 299 on 17 df, p=0
Wald test = 150 on 17 df, p=0
Score (logrank) test = 325 on 17 df, p=0, Robust = 167 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04