response: (chd1=='2')
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: 19Q12_MG_446
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing,
selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=2712 (42 observations deleted due to missingness)
coef exp(coef) se(coef) robust se
allele[notmissing] -0.00113 0.999 0.07223 0.09182
wz[notmissing, selectedcovariates]1 0.23194 1.261 0.02903 0.05145
wz[notmissing, selectedcovariates]2 -0.99552 0.370 0.13632 0.17188
wz[notmissing, selectedcovariates]3 0.00926 1.009 0.00951 0.01139
wz[notmissing, selectedcovariates]4 0.01350 1.014 0.00269 0.00347
wz[notmissing, selectedcovariates]5 0.47351 1.606 0.09012 0.12432
wz[notmissing, selectedcovariates]6 0.82968 2.293 0.12044 0.17739
wruaco[notmissing]FIN-EAS_03 1.10081 3.007 0.15075 0.19101
wruaco[notmissing]FIN-EAS_24 0.73857 2.093 0.13987 0.17565
wruaco[notmissing]FIN-WES_03 0.53364 1.705 0.16863 0.20660
wruaco[notmissing]FIN-WES_24 0.45749 1.580 0.15601 0.21849
wruaco[notmissing]FRA-LIL_21 0.47760 1.612 0.23337 0.35188
wruaco[notmissing]FRA-STR_21 0.35753 1.430 0.22289 0.29978
wruaco[notmissing]FRA-TOU_21 0.88814 2.431 0.22816 0.30157
wruaco[notmissing]SWE-NSW_02 0.75251 2.122 0.23905 0.31894
wruaco[notmissing]SWE-NSW_03 0.26019 1.297 0.32735 0.38819
wruaco[notmissing]UNK-BEL_21 0.99195 2.696 0.16676 0.21857
z p
allele[notmissing] -0.0123 9.9e-01
wz[notmissing, selectedcovariates]1 4.5081 6.5e-06
wz[notmissing, selectedcovariates]2 -5.7919 7.0e-09
wz[notmissing, selectedcovariates]3 0.8129 4.2e-01
wz[notmissing, selectedcovariates]4 3.8950 9.8e-05
wz[notmissing, selectedcovariates]5 3.8087 1.4e-04
wz[notmissing, selectedcovariates]6 4.6773 2.9e-06
wruaco[notmissing]FIN-EAS_03 5.7631 8.3e-09
wruaco[notmissing]FIN-EAS_24 4.2048 2.6e-05
wruaco[notmissing]FIN-WES_03 2.5830 9.8e-03
wruaco[notmissing]FIN-WES_24 2.0939 3.6e-02
wruaco[notmissing]FRA-LIL_21 1.3573 1.7e-01
wruaco[notmissing]FRA-STR_21 1.1926 2.3e-01
wruaco[notmissing]FRA-TOU_21 2.9450 3.2e-03
wruaco[notmissing]SWE-NSW_02 2.3594 1.8e-02
wruaco[notmissing]SWE-NSW_03 0.6703 5.0e-01
wruaco[notmissing]UNK-BEL_21 4.5383 5.7e-06
exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing] 0.999 1.001 0.834 1.196
wz[notmissing, selectedcovariates]1 1.261 0.793 1.140 1.395
wz[notmissing, selectedcovariates]2 0.370 2.706 0.264 0.518
wz[notmissing, selectedcovariates]3 1.009 0.991 0.987 1.032
wz[notmissing, selectedcovariates]4 1.014 0.987 1.007 1.020
wz[notmissing, selectedcovariates]5 1.606 0.623 1.258 2.049
wz[notmissing, selectedcovariates]6 2.293 0.436 1.619 3.246
wruaco[notmissing]FIN-EAS_03 3.007 0.333 2.068 4.372
wruaco[notmissing]FIN-EAS_24 2.093 0.478 1.483 2.953
wruaco[notmissing]FIN-WES_03 1.705 0.586 1.137 2.556
wruaco[notmissing]FIN-WES_24 1.580 0.633 1.030 2.425
wruaco[notmissing]FRA-LIL_21 1.612 0.620 0.809 3.213
wruaco[notmissing]FRA-STR_21 1.430 0.699 0.795 2.573
wruaco[notmissing]FRA-TOU_21 2.431 0.411 1.346 4.389
wruaco[notmissing]SWE-NSW_02 2.122 0.471 1.136 3.965
wruaco[notmissing]SWE-NSW_03 1.297 0.771 0.606 2.776
wruaco[notmissing]UNK-BEL_21 2.696 0.371 1.757 4.139
Rsquare= 0.108 (max possible= 0.986 )
Likelihood ratio test= 311 on 17 df, p=0
Wald test = 152 on 17 df, p=0
Score (logrank) test = 342 on 17 df, p=0, Robust = 171 p=0
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04