response: (stroke1 %in% c('1','2'))
covariates: nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: 10Q11_21_MG_458
Call:
coxph(formula = y[notmissing] ~ allele[notmissing] + wz[notmissing,
selectedcovariates] + wruaco[notmissing] + strata(wsex[notmissing]) +
cluster(wdata$id[notmissing]), weights = weight[notmissing],
robust = TRUE)
n=2535 (43 observations deleted due to missingness)
coef exp(coef) se(coef) robust se z
allele[notmissing] 0.1748 1.191 0.08875 0.10023 1.744
wz[notmissing, selectedcovariates]1 0.0338 1.034 0.04028 0.04813 0.701
wz[notmissing, selectedcovariates]2 -0.8063 0.447 0.15675 0.18463 -4.367
wz[notmissing, selectedcovariates]3 -0.0184 0.982 0.01131 0.01302 -1.414
wz[notmissing, selectedcovariates]4 0.0205 1.021 0.00328 0.00392 5.241
wz[notmissing, selectedcovariates]5 0.3761 1.457 0.11101 0.12937 2.907
wz[notmissing, selectedcovariates]6 0.6885 1.991 0.14692 0.19256 3.576
wruaco[notmissing]FIN-EAS_03 0.2307 1.259 0.19343 0.22122 1.043
wruaco[notmissing]FIN-EAS_24 -0.2237 0.800 0.17377 0.20453 -1.094
wruaco[notmissing]FIN-WES_03 0.0964 1.101 0.18864 0.21314 0.452
wruaco[notmissing]FIN-WES_24 -0.1653 0.848 0.18061 0.22076 -0.749
wruaco[notmissing]FRA-LIL_21 -1.3036 0.272 0.51687 0.57083 -2.284
wruaco[notmissing]FRA-STR_21 -0.8862 0.412 0.38490 0.42640 -2.078
wruaco[notmissing]FRA-TOU_21 -0.9879 0.372 0.52295 0.56302 -1.755
wruaco[notmissing]SWE-NSW_02 -0.1394 0.870 0.26390 0.34240 -0.407
wruaco[notmissing]SWE-NSW_03 0.0915 1.096 0.23555 0.27252 0.336
wruaco[notmissing]UNK-BEL_21 -0.7117 0.491 0.31678 0.33860 -2.102
p
allele[notmissing] 8.1e-02
wz[notmissing, selectedcovariates]1 4.8e-01
wz[notmissing, selectedcovariates]2 1.3e-05
wz[notmissing, selectedcovariates]3 1.6e-01
wz[notmissing, selectedcovariates]4 1.6e-07
wz[notmissing, selectedcovariates]5 3.6e-03
wz[notmissing, selectedcovariates]6 3.5e-04
wruaco[notmissing]FIN-EAS_03 3.0e-01
wruaco[notmissing]FIN-EAS_24 2.7e-01
wruaco[notmissing]FIN-WES_03 6.5e-01
wruaco[notmissing]FIN-WES_24 4.5e-01
wruaco[notmissing]FRA-LIL_21 2.2e-02
wruaco[notmissing]FRA-STR_21 3.8e-02
wruaco[notmissing]FRA-TOU_21 7.9e-02
wruaco[notmissing]SWE-NSW_02 6.8e-01
wruaco[notmissing]SWE-NSW_03 7.4e-01
wruaco[notmissing]UNK-BEL_21 3.6e-02
exp(coef) exp(-coef) lower .95 upper .95
allele[notmissing] 1.191 0.840 0.9786 1.450
wz[notmissing, selectedcovariates]1 1.034 0.967 0.9412 1.137
wz[notmissing, selectedcovariates]2 0.447 2.239 0.3110 0.641
wz[notmissing, selectedcovariates]3 0.982 1.019 0.9570 1.007
wz[notmissing, selectedcovariates]4 1.021 0.980 1.0129 1.029
wz[notmissing, selectedcovariates]5 1.457 0.687 1.1304 1.877
wz[notmissing, selectedcovariates]6 1.991 0.502 1.3649 2.904
wruaco[notmissing]FIN-EAS_03 1.259 0.794 0.8164 1.943
wruaco[notmissing]FIN-EAS_24 0.800 1.251 0.5355 1.194
wruaco[notmissing]FIN-WES_03 1.101 0.908 0.7252 1.672
wruaco[notmissing]FIN-WES_24 0.848 1.180 0.5499 1.307
wruaco[notmissing]FRA-LIL_21 0.272 3.683 0.0887 0.831
wruaco[notmissing]FRA-STR_21 0.412 2.426 0.1787 0.951
wruaco[notmissing]FRA-TOU_21 0.372 2.686 0.1235 1.123
wruaco[notmissing]SWE-NSW_02 0.870 1.150 0.4446 1.702
wruaco[notmissing]SWE-NSW_03 1.096 0.913 0.6423 1.869
wruaco[notmissing]UNK-BEL_21 0.491 2.038 0.2527 0.953
Rsquare= 0.055 (max possible= 0.955 )
Likelihood ratio test= 142 on 17 df, p=0
Wald test = 98.4 on 17 df, p=1.77e-13
Score (logrank) test = 140 on 17 df, p=0, Robust = 92 p=2.65e-12
(Note: the likelihood ratio and score tests assume independence of
observations within a cluster, the Wald and robust score tests do not).
Updated on 2008-06-04